SILENT_MODE BLOCK_FILE jp_uEqdbRQ.concise.blc MAX_NSEQ 695 MAX_INPUT_LEN 697 OUTPUT_FILE jp_uEqdbRQ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 105 684 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 685 105 694 H SPACE SUB_CHARS 1 685 105 694 E SPACE SUB_CHARS 1 685 105 694 - SPACE STRAND 21 688 22 COLOUR_TEXT_REGION 21 688 22 688 51 STRAND 81 688 86 COLOUR_TEXT_REGION 81 688 86 688 51 STRAND 98 688 103 COLOUR_TEXT_REGION 98 688 103 688 51 HELIX 2 688 18 COLOUR_TEXT_REGION 2 688 18 688 50 HELIX 25 688 41 COLOUR_TEXT_REGION 25 688 41 688 50 HELIX 47 688 56 COLOUR_TEXT_REGION 47 688 56 688 50 HELIX 61 688 74 COLOUR_TEXT_REGION 61 688 74 688 50 STRAND 21 693 23 COLOUR_TEXT_REGION 21 693 23 693 51 STRAND 81 693 86 COLOUR_TEXT_REGION 81 693 86 693 51 STRAND 98 693 103 COLOUR_TEXT_REGION 98 693 103 693 51 HELIX 2 693 18 COLOUR_TEXT_REGION 2 693 18 693 50 HELIX 25 693 42 COLOUR_TEXT_REGION 25 693 42 693 50 HELIX 47 693 56 COLOUR_TEXT_REGION 47 693 56 693 50 HELIX 61 693 73 COLOUR_TEXT_REGION 61 693 73 693 50 STRAND 21 694 22 COLOUR_TEXT_REGION 21 694 22 694 51 STRAND 81 694 86 COLOUR_TEXT_REGION 81 694 86 694 51 STRAND 98 694 103 COLOUR_TEXT_REGION 98 694 103 694 51 HELIX 2 694 18 COLOUR_TEXT_REGION 2 694 18 694 50 HELIX 25 694 40 COLOUR_TEXT_REGION 25 694 40 694 50 HELIX 47 694 56 COLOUR_TEXT_REGION 47 694 56 694 50 HELIX 61 694 75 COLOUR_TEXT_REGION 61 694 75 694 50