SILENT_MODE
BLOCK_FILE jp_GTIUeru.concise.blc
MAX_NSEQ 518
MAX_INPUT_LEN 520
OUTPUT_FILE jp_GTIUeru.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 70 507   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 508 70 517 H SPACE
SUB_CHARS 1 508 70 517 E SPACE
SUB_CHARS 1 508 70 517 - SPACE
STRAND 3 511 7
COLOUR_TEXT_REGION 3 511 7 511 51
STRAND 16 511 20
COLOUR_TEXT_REGION 16 511 20 511 51
STRAND 29 511 34
COLOUR_TEXT_REGION 29 511 34 511 51
STRAND 39 511 43
COLOUR_TEXT_REGION 39 511 43 511 51
STRAND 55 511 58
COLOUR_TEXT_REGION 55 511 58 511 51
STRAND 63 511 68
COLOUR_TEXT_REGION 63 511 68 511 51
HELIX 22 511 26
COLOUR_TEXT_REGION 22 511 26 511 50
STRAND 3 516 7
COLOUR_TEXT_REGION 3 516 7 516 51
STRAND 16 516 20
COLOUR_TEXT_REGION 16 516 20 516 51
STRAND 29 516 34
COLOUR_TEXT_REGION 29 516 34 516 51
STRAND 39 516 43
COLOUR_TEXT_REGION 39 516 43 516 51
STRAND 55 516 58
COLOUR_TEXT_REGION 55 516 58 516 51
STRAND 63 516 68
COLOUR_TEXT_REGION 63 516 68 516 51
HELIX 22 516 27
COLOUR_TEXT_REGION 22 516 27 516 50
STRAND 3 517 7
COLOUR_TEXT_REGION 3 517 7 517 51
STRAND 16 517 20
COLOUR_TEXT_REGION 16 517 20 517 51
STRAND 29 517 34
COLOUR_TEXT_REGION 29 517 34 517 51
STRAND 38 517 43
COLOUR_TEXT_REGION 38 517 43 517 51
STRAND 55 517 57
COLOUR_TEXT_REGION 55 517 57 517 51
STRAND 63 517 68
COLOUR_TEXT_REGION 63 517 68 517 51
HELIX 22 517 26
COLOUR_TEXT_REGION 22 517 26 517 50