SILENT_MODE
BLOCK_FILE jp_Wy5RWVn.concise.blc
MAX_NSEQ 482
MAX_INPUT_LEN 484
OUTPUT_FILE jp_Wy5RWVn.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 68 471   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 472 68 481 H SPACE
SUB_CHARS 1 472 68 481 E SPACE
SUB_CHARS 1 472 68 481 - SPACE
STRAND 4 475 8
COLOUR_TEXT_REGION 4 475 8 475 51
STRAND 26 475 31
COLOUR_TEXT_REGION 26 475 31 475 51
STRAND 35 475 39
COLOUR_TEXT_REGION 35 475 39 475 51
STRAND 54 475 59
COLOUR_TEXT_REGION 54 475 59 475 51
HELIX 12 475 22
COLOUR_TEXT_REGION 12 475 22 475 50
HELIX 42 475 50
COLOUR_TEXT_REGION 42 475 50 475 50
STRAND 4 480 8
COLOUR_TEXT_REGION 4 480 8 480 51
STRAND 26 480 32
COLOUR_TEXT_REGION 26 480 32 480 51
STRAND 35 480 39
COLOUR_TEXT_REGION 35 480 39 480 51
STRAND 54 480 59
COLOUR_TEXT_REGION 54 480 59 480 51
HELIX 12 480 22
COLOUR_TEXT_REGION 12 480 22 480 50
HELIX 43 480 50
COLOUR_TEXT_REGION 43 480 50 480 50
STRAND 4 481 8
COLOUR_TEXT_REGION 4 481 8 481 51
STRAND 26 481 31
COLOUR_TEXT_REGION 26 481 31 481 51
STRAND 35 481 38
COLOUR_TEXT_REGION 35 481 38 481 51
STRAND 54 481 59
COLOUR_TEXT_REGION 54 481 59 481 51
HELIX 12 481 22
COLOUR_TEXT_REGION 12 481 22 481 50
HELIX 42 481 50
COLOUR_TEXT_REGION 42 481 50 481 50