SILENT_MODE
BLOCK_FILE jp_YZ53gnx.concise.blc
MAX_NSEQ 998
MAX_INPUT_LEN 1000
OUTPUT_FILE jp_YZ53gnx.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 108 987   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 988 108 997 H SPACE
SUB_CHARS 1 988 108 997 E SPACE
SUB_CHARS 1 988 108 997 - SPACE
STRAND 22 991 26
COLOUR_TEXT_REGION 22 991 26 991 51
STRAND 60 991 64
COLOUR_TEXT_REGION 60 991 64 991 51
STRAND 87 991 89
COLOUR_TEXT_REGION 87 991 89 991 51
HELIX 9 991 17
COLOUR_TEXT_REGION 9 991 17 991 50
HELIX 30 991 34
COLOUR_TEXT_REGION 30 991 34 991 50
HELIX 70 991 80
COLOUR_TEXT_REGION 70 991 80 991 50
HELIX 92 991 98
COLOUR_TEXT_REGION 92 991 98 991 50
STRAND 22 996 26
COLOUR_TEXT_REGION 22 996 26 996 51
STRAND 60 996 65
COLOUR_TEXT_REGION 60 996 65 996 51
STRAND 87 996 89
COLOUR_TEXT_REGION 87 996 89 996 51
HELIX 9 996 17
COLOUR_TEXT_REGION 9 996 17 996 50
HELIX 30 996 34
COLOUR_TEXT_REGION 30 996 34 996 50
HELIX 48 996 49
COLOUR_TEXT_REGION 48 996 49 996 50
HELIX 70 996 80
COLOUR_TEXT_REGION 70 996 80 996 50
HELIX 90 996 90
COLOUR_TEXT_REGION 90 996 90 996 50
HELIX 92 996 98
COLOUR_TEXT_REGION 92 996 98 996 50
STRAND 22 997 27
COLOUR_TEXT_REGION 22 997 27 997 51
STRAND 59 997 64
COLOUR_TEXT_REGION 59 997 64 997 51
STRAND 87 997 89
COLOUR_TEXT_REGION 87 997 89 997 51
HELIX 9 997 17
COLOUR_TEXT_REGION 9 997 17 997 50
HELIX 31 997 33
COLOUR_TEXT_REGION 31 997 33 997 50
HELIX 70 997 80
COLOUR_TEXT_REGION 70 997 80 997 50
HELIX 92 997 99
COLOUR_TEXT_REGION 92 997 99 997 50