SILENT_MODE
BLOCK_FILE jp_3MAL1fT.concise.blc
MAX_NSEQ 471
MAX_INPUT_LEN 473
OUTPUT_FILE jp_3MAL1fT.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 78 460   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 461 78 470 H SPACE
SUB_CHARS 1 461 78 470 E SPACE
SUB_CHARS 1 461 78 470 - SPACE
STRAND 3 464 13
COLOUR_TEXT_REGION 3 464 13 464 51
STRAND 43 464 51
COLOUR_TEXT_REGION 43 464 51 464 51
STRAND 58 464 61
COLOUR_TEXT_REGION 58 464 61 464 51
STRAND 66 464 77
COLOUR_TEXT_REGION 66 464 77 464 51
HELIX 22 464 35
COLOUR_TEXT_REGION 22 464 35 464 50
STRAND 3 469 13
COLOUR_TEXT_REGION 3 469 13 469 51
STRAND 37 469 38
COLOUR_TEXT_REGION 37 469 38 469 51
STRAND 43 469 52
COLOUR_TEXT_REGION 43 469 52 469 51
STRAND 58 469 61
COLOUR_TEXT_REGION 58 469 61 469 51
STRAND 65 469 76
COLOUR_TEXT_REGION 65 469 76 469 51
HELIX 22 469 35
COLOUR_TEXT_REGION 22 469 35 469 50
STRAND 3 470 14
COLOUR_TEXT_REGION 3 470 14 470 51
STRAND 43 470 50
COLOUR_TEXT_REGION 43 470 50 470 51
STRAND 58 470 61
COLOUR_TEXT_REGION 58 470 61 470 51
STRAND 66 470 77
COLOUR_TEXT_REGION 66 470 77 470 51
HELIX 22 470 35
COLOUR_TEXT_REGION 22 470 35 470 50