SILENT_MODE
BLOCK_FILE jp_vtfOAVi.concise.blc
MAX_NSEQ 1328
MAX_INPUT_LEN 1330
OUTPUT_FILE jp_vtfOAVi.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 52 1317   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1318 52 1327 H SPACE
SUB_CHARS 1 1318 52 1327 E SPACE
SUB_CHARS 1 1318 52 1327 - SPACE
STRAND 21 1321 25
COLOUR_TEXT_REGION 21 1321 25 1321 51
STRAND 27 1321 35
COLOUR_TEXT_REGION 27 1321 35 1321 51
HELIX 45 1321 48
COLOUR_TEXT_REGION 45 1321 48 1321 50
STRAND 15 1326 16
COLOUR_TEXT_REGION 15 1326 16 1326 51
STRAND 21 1326 35
COLOUR_TEXT_REGION 21 1326 35 1326 51
HELIX 45 1326 47
COLOUR_TEXT_REGION 45 1326 47 1326 50
STRAND 21 1327 24
COLOUR_TEXT_REGION 21 1327 24 1327 51
STRAND 28 1327 35
COLOUR_TEXT_REGION 28 1327 35 1327 51
HELIX 44 1327 49
COLOUR_TEXT_REGION 44 1327 49 1327 50