SILENT_MODE
BLOCK_FILE jp_lGcSc3K.concise.blc
MAX_NSEQ 454
MAX_INPUT_LEN 456
OUTPUT_FILE jp_lGcSc3K.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 97 443   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 444 97 453 H SPACE
SUB_CHARS 1 444 97 453 E SPACE
SUB_CHARS 1 444 97 453 - SPACE
HELIX 3 447 23
COLOUR_TEXT_REGION 3 447 23 447 50
HELIX 25 447 54
COLOUR_TEXT_REGION 25 447 54 447 50
HELIX 56 447 57
COLOUR_TEXT_REGION 56 447 57 447 50
HELIX 62 447 94
COLOUR_TEXT_REGION 62 447 94 447 50
HELIX 3 452 22
COLOUR_TEXT_REGION 3 452 22 452 50
HELIX 25 452 51
COLOUR_TEXT_REGION 25 452 51 452 50
HELIX 64 452 94
COLOUR_TEXT_REGION 64 452 94 452 50
HELIX 3 453 23
COLOUR_TEXT_REGION 3 453 23 453 50
HELIX 25 453 93
COLOUR_TEXT_REGION 25 453 93 453 50