SILENT_MODE BLOCK_FILE jp_aqrqUU_.concise.blc MAX_NSEQ 955 MAX_INPUT_LEN 957 OUTPUT_FILE jp_aqrqUU_.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 143 944 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 945 143 954 H SPACE SUB_CHARS 1 945 143 954 E SPACE SUB_CHARS 1 945 143 954 - SPACE STRAND 4 948 10 COLOUR_TEXT_REGION 4 948 10 948 51 STRAND 41 948 46 COLOUR_TEXT_REGION 41 948 46 948 51 STRAND 51 948 56 COLOUR_TEXT_REGION 51 948 56 948 51 STRAND 73 948 76 COLOUR_TEXT_REGION 73 948 76 948 51 HELIX 16 948 22 COLOUR_TEXT_REGION 16 948 22 948 50 HELIX 26 948 35 COLOUR_TEXT_REGION 26 948 35 948 50 HELIX 61 948 69 COLOUR_TEXT_REGION 61 948 69 948 50 HELIX 79 948 90 COLOUR_TEXT_REGION 79 948 90 948 50 HELIX 101 948 116 COLOUR_TEXT_REGION 101 948 116 948 50 HELIX 121 948 139 COLOUR_TEXT_REGION 121 948 139 948 50 STRAND 4 953 10 COLOUR_TEXT_REGION 4 953 10 953 51 STRAND 41 953 46 COLOUR_TEXT_REGION 41 953 46 953 51 STRAND 51 953 56 COLOUR_TEXT_REGION 51 953 56 953 51 STRAND 73 953 77 COLOUR_TEXT_REGION 73 953 77 953 51 STRAND 95 953 97 COLOUR_TEXT_REGION 95 953 97 953 51 HELIX 16 953 22 COLOUR_TEXT_REGION 16 953 22 953 50 HELIX 26 953 35 COLOUR_TEXT_REGION 26 953 35 953 50 HELIX 60 953 69 COLOUR_TEXT_REGION 60 953 69 953 50 HELIX 79 953 89 COLOUR_TEXT_REGION 79 953 89 953 50 HELIX 101 953 116 COLOUR_TEXT_REGION 101 953 116 953 50 HELIX 121 953 139 COLOUR_TEXT_REGION 121 953 139 953 50 STRAND 4 954 10 COLOUR_TEXT_REGION 4 954 10 954 51 STRAND 41 954 46 COLOUR_TEXT_REGION 41 954 46 954 51 STRAND 51 954 56 COLOUR_TEXT_REGION 51 954 56 954 51 STRAND 72 954 76 COLOUR_TEXT_REGION 72 954 76 954 51 HELIX 16 954 22 COLOUR_TEXT_REGION 16 954 22 954 50 HELIX 26 954 34 COLOUR_TEXT_REGION 26 954 34 954 50 HELIX 61 954 68 COLOUR_TEXT_REGION 61 954 68 954 50 HELIX 71 954 71 COLOUR_TEXT_REGION 71 954 71 954 50 HELIX 79 954 91 COLOUR_TEXT_REGION 79 954 91 954 50 HELIX 102 954 116 COLOUR_TEXT_REGION 102 954 116 954 50 HELIX 121 954 139 COLOUR_TEXT_REGION 121 954 139 954 50