SILENT_MODE
BLOCK_FILE jp_g8Ps1Pm.concise.blc
MAX_NSEQ 140
MAX_INPUT_LEN 142
OUTPUT_FILE jp_g8Ps1Pm.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 127 129   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 130 127 139 H SPACE
SUB_CHARS 1 130 127 139 E SPACE
SUB_CHARS 1 130 127 139 - SPACE
STRAND 41 133 45
COLOUR_TEXT_REGION 41 133 45 133 51
STRAND 49 133 54
COLOUR_TEXT_REGION 49 133 54 133 51
STRAND 65 133 71
COLOUR_TEXT_REGION 65 133 71 133 51
STRAND 76 133 84
COLOUR_TEXT_REGION 76 133 84 133 51
STRAND 91 133 96
COLOUR_TEXT_REGION 91 133 96 133 51
HELIX 5 133 8
COLOUR_TEXT_REGION 5 133 8 133 50
HELIX 13 133 22
COLOUR_TEXT_REGION 13 133 22 133 50
HELIX 103 133 120
COLOUR_TEXT_REGION 103 133 120 133 50
STRAND 41 138 45
COLOUR_TEXT_REGION 41 138 45 138 51
STRAND 49 138 54
COLOUR_TEXT_REGION 49 138 54 138 51
STRAND 65 138 71
COLOUR_TEXT_REGION 65 138 71 138 51
STRAND 76 138 84
COLOUR_TEXT_REGION 76 138 84 138 51
STRAND 91 138 95
COLOUR_TEXT_REGION 91 138 95 138 51
HELIX 5 138 8
COLOUR_TEXT_REGION 5 138 8 138 50
HELIX 13 138 22
COLOUR_TEXT_REGION 13 138 22 138 50
HELIX 102 138 120
COLOUR_TEXT_REGION 102 138 120 138 50
STRAND 41 139 45
COLOUR_TEXT_REGION 41 139 45 139 51
STRAND 49 139 53
COLOUR_TEXT_REGION 49 139 53 139 51
STRAND 65 139 71
COLOUR_TEXT_REGION 65 139 71 139 51
STRAND 76 139 84
COLOUR_TEXT_REGION 76 139 84 139 51
STRAND 91 139 96
COLOUR_TEXT_REGION 91 139 96 139 51
HELIX 5 139 8
COLOUR_TEXT_REGION 5 139 8 139 50
HELIX 12 139 22
COLOUR_TEXT_REGION 12 139 22 139 50
HELIX 29 139 32
COLOUR_TEXT_REGION 29 139 32 139 50
HELIX 104 139 119
COLOUR_TEXT_REGION 104 139 119 139 50