SILENT_MODE BLOCK_FILE jp_uc4wOnr.concise.blc MAX_NSEQ 793 MAX_INPUT_LEN 795 OUTPUT_FILE jp_uc4wOnr.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 362 782 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 783 362 792 H SPACE SUB_CHARS 1 783 362 792 E SPACE SUB_CHARS 1 783 362 792 - SPACE STRAND 125 786 130 COLOUR_TEXT_REGION 125 786 130 786 51 STRAND 159 786 164 COLOUR_TEXT_REGION 159 786 164 786 51 STRAND 173 786 181 COLOUR_TEXT_REGION 173 786 181 786 51 STRAND 196 786 201 COLOUR_TEXT_REGION 196 786 201 786 51 STRAND 210 786 220 COLOUR_TEXT_REGION 210 786 220 786 51 STRAND 236 786 242 COLOUR_TEXT_REGION 236 786 242 786 51 STRAND 256 786 262 COLOUR_TEXT_REGION 256 786 262 786 51 STRAND 268 786 272 COLOUR_TEXT_REGION 268 786 272 786 51 STRAND 321 786 324 COLOUR_TEXT_REGION 321 786 324 786 51 STRAND 330 786 334 COLOUR_TEXT_REGION 330 786 334 786 51 STRAND 338 786 338 COLOUR_TEXT_REGION 338 786 338 786 51 HELIX 3 786 22 COLOUR_TEXT_REGION 3 786 22 786 50 HELIX 25 786 38 COLOUR_TEXT_REGION 25 786 38 786 50 HELIX 47 786 84 COLOUR_TEXT_REGION 47 786 84 786 50 HELIX 89 786 114 COLOUR_TEXT_REGION 89 786 114 786 50 HELIX 137 786 155 COLOUR_TEXT_REGION 137 786 155 786 50 HELIX 185 786 191 COLOUR_TEXT_REGION 185 786 191 786 50 HELIX 276 786 311 COLOUR_TEXT_REGION 276 786 311 786 50 HELIX 343 786 346 COLOUR_TEXT_REGION 343 786 346 786 50 HELIX 350 786 359 COLOUR_TEXT_REGION 350 786 359 786 50 STRAND 125 791 130 COLOUR_TEXT_REGION 125 791 130 791 51 STRAND 159 791 164 COLOUR_TEXT_REGION 159 791 164 791 51 STRAND 173 791 181 COLOUR_TEXT_REGION 173 791 181 791 51 STRAND 196 791 201 COLOUR_TEXT_REGION 196 791 201 791 51 STRAND 210 791 220 COLOUR_TEXT_REGION 210 791 220 791 51 STRAND 236 791 242 COLOUR_TEXT_REGION 236 791 242 791 51 STRAND 254 791 262 COLOUR_TEXT_REGION 254 791 262 791 51 STRAND 268 791 272 COLOUR_TEXT_REGION 268 791 272 791 51 STRAND 320 791 323 COLOUR_TEXT_REGION 320 791 323 791 51 STRAND 330 791 335 COLOUR_TEXT_REGION 330 791 335 791 51 HELIX 3 791 22 COLOUR_TEXT_REGION 3 791 22 791 50 HELIX 25 791 38 COLOUR_TEXT_REGION 25 791 38 791 50 HELIX 47 791 85 COLOUR_TEXT_REGION 47 791 85 791 50 HELIX 89 791 114 COLOUR_TEXT_REGION 89 791 114 791 50 HELIX 137 791 155 COLOUR_TEXT_REGION 137 791 155 791 50 HELIX 185 791 191 COLOUR_TEXT_REGION 185 791 191 791 50 HELIX 276 791 310 COLOUR_TEXT_REGION 276 791 310 791 50 HELIX 343 791 346 COLOUR_TEXT_REGION 343 791 346 791 50 HELIX 350 791 360 COLOUR_TEXT_REGION 350 791 360 791 50 STRAND 124 792 130 COLOUR_TEXT_REGION 124 792 130 792 51 STRAND 159 792 164 COLOUR_TEXT_REGION 159 792 164 792 51 STRAND 174 792 180 COLOUR_TEXT_REGION 174 792 180 792 51 STRAND 197 792 201 COLOUR_TEXT_REGION 197 792 201 792 51 STRAND 210 792 219 COLOUR_TEXT_REGION 210 792 219 792 51 STRAND 229 792 230 COLOUR_TEXT_REGION 229 792 230 792 51 STRAND 236 792 242 COLOUR_TEXT_REGION 236 792 242 792 51 STRAND 256 792 261 COLOUR_TEXT_REGION 256 792 261 792 51 STRAND 267 792 271 COLOUR_TEXT_REGION 267 792 271 792 51 STRAND 322 792 326 COLOUR_TEXT_REGION 322 792 326 792 51 STRAND 329 792 332 COLOUR_TEXT_REGION 329 792 332 792 51 STRAND 338 792 339 COLOUR_TEXT_REGION 338 792 339 792 51 HELIX 3 792 22 COLOUR_TEXT_REGION 3 792 22 792 50 HELIX 24 792 39 COLOUR_TEXT_REGION 24 792 39 792 50 HELIX 46 792 83 COLOUR_TEXT_REGION 46 792 83 792 50 HELIX 90 792 114 COLOUR_TEXT_REGION 90 792 114 792 50 HELIX 137 792 155 COLOUR_TEXT_REGION 137 792 155 792 50 HELIX 186 792 190 COLOUR_TEXT_REGION 186 792 190 792 50 HELIX 276 792 312 COLOUR_TEXT_REGION 276 792 312 792 50 HELIX 343 792 346 COLOUR_TEXT_REGION 343 792 346 792 50 HELIX 350 792 359 COLOUR_TEXT_REGION 350 792 359 792 50