SILENT_MODE
BLOCK_FILE jp_u_nyAWX.concise.blc
MAX_NSEQ 1118
MAX_INPUT_LEN 1120
OUTPUT_FILE jp_u_nyAWX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 147 1107   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1108 147 1117 H SPACE
SUB_CHARS 1 1108 147 1117 E SPACE
SUB_CHARS 1 1108 147 1117 - SPACE
STRAND 26 1111 31
COLOUR_TEXT_REGION 26 1111 31 1111 51
STRAND 58 1111 59
COLOUR_TEXT_REGION 58 1111 59 1111 51
STRAND 68 1111 73
COLOUR_TEXT_REGION 68 1111 73 1111 51
STRAND 97 1111 103
COLOUR_TEXT_REGION 97 1111 103 1111 51
STRAND 108 1111 114
COLOUR_TEXT_REGION 108 1111 114 1111 51
STRAND 141 1111 144
COLOUR_TEXT_REGION 141 1111 144 1111 51
HELIX 18 1111 23
COLOUR_TEXT_REGION 18 1111 23 1111 50
HELIX 36 1111 53
COLOUR_TEXT_REGION 36 1111 53 1111 50
HELIX 78 1111 82
COLOUR_TEXT_REGION 78 1111 82 1111 50
HELIX 119 1111 133
COLOUR_TEXT_REGION 119 1111 133 1111 50
STRAND 26 1116 31
COLOUR_TEXT_REGION 26 1116 31 1116 51
STRAND 58 1116 59
COLOUR_TEXT_REGION 58 1116 59 1116 51
STRAND 68 1116 73
COLOUR_TEXT_REGION 68 1116 73 1116 51
STRAND 97 1116 103
COLOUR_TEXT_REGION 97 1116 103 1116 51
STRAND 109 1116 114
COLOUR_TEXT_REGION 109 1116 114 1116 51
STRAND 141 1116 144
COLOUR_TEXT_REGION 141 1116 144 1116 51
HELIX 4 1116 5
COLOUR_TEXT_REGION 4 1116 5 1116 50
HELIX 36 1116 53
COLOUR_TEXT_REGION 36 1116 53 1116 50
HELIX 78 1116 82
COLOUR_TEXT_REGION 78 1116 82 1116 50
HELIX 119 1116 132
COLOUR_TEXT_REGION 119 1116 132 1116 50
STRAND 27 1117 31
COLOUR_TEXT_REGION 27 1117 31 1117 51
STRAND 58 1117 59
COLOUR_TEXT_REGION 58 1117 59 1117 51
STRAND 68 1117 73
COLOUR_TEXT_REGION 68 1117 73 1117 51
STRAND 97 1117 103
COLOUR_TEXT_REGION 97 1117 103 1117 51
STRAND 108 1117 114
COLOUR_TEXT_REGION 108 1117 114 1117 51
STRAND 141 1117 144
COLOUR_TEXT_REGION 141 1117 144 1117 51
HELIX 16 1117 26
COLOUR_TEXT_REGION 16 1117 26 1117 50
HELIX 37 1117 53
COLOUR_TEXT_REGION 37 1117 53 1117 50
HELIX 77 1117 82
COLOUR_TEXT_REGION 77 1117 82 1117 50
HELIX 119 1117 133
COLOUR_TEXT_REGION 119 1117 133 1117 50