SILENT_MODE
BLOCK_FILE jp_TrVHj99.concise.blc
MAX_NSEQ 964
MAX_INPUT_LEN 966
OUTPUT_FILE jp_TrVHj99.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 144 953   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 954 144 963 H SPACE
SUB_CHARS 1 954 144 963 E SPACE
SUB_CHARS 1 954 144 963 - SPACE
HELIX 4 957 138
COLOUR_TEXT_REGION 4 957 138 957 50
HELIX 4 962 30
COLOUR_TEXT_REGION 4 962 30 962 50
HELIX 32 962 138
COLOUR_TEXT_REGION 32 962 138 962 50
HELIX 4 963 20
COLOUR_TEXT_REGION 4 963 20 963 50
HELIX 23 963 35
COLOUR_TEXT_REGION 23 963 35 963 50
HELIX 38 963 70
COLOUR_TEXT_REGION 38 963 70 963 50
HELIX 74 963 137
COLOUR_TEXT_REGION 74 963 137 963 50
HELIX 140 963 141
COLOUR_TEXT_REGION 140 963 141 963 50