QUERY : VTYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLNKEKV : QUERY
UniRef90_C8P9R2 : LDYQQTYKKEILTEFASSIYAKVVNLVVDQELNIHDESHFLVKLMHQLGDAKLVIMDAHSLGELETIQAYWQAMNNFIDSLPTKSKV : UniRef90_C8P9R2
UniRef90_R2RYY6 : MDYEKTFKIESLNEFSRNVYNRVLRYVVNHQIDRQNKNDLYAELLDQLKGMLQMNLFEMSMSDLAKVESYWNAMDVYTKSITDQKAV : UniRef90_R2RYY6
UniRef90_D7WVZ8 : LNYEQTFKIEVLNEFSNGVYARLLNFILKNGVDKNDSNNFYVSLLQQFSEMLNVDLFKMSNVELDNVKSYWENMNDYIKGITKEKS- : UniRef90_D7WVZ8
UniRef90_R8I256 : MDYEHTFKIELLNELSNRVHARLLNFVIKKGIDSTNNKNFYACLLEQFSEMLNVDLFKMTNEELENAHSYWEKMNNLTKEITKDKS- : UniRef90_R8I256
UniRef90_S1RV26 : LDYQQTYKEEILVEFASSVYAQVVNLVVEHKLNIHDENHFLVHLMHQLGDAKLAITDAHSLEELETTQEYWQTMNEYVKRL------ : UniRef90_S1RV26
UniRef90_S0KL36 : IDYELTAKIEIINEFSYGIYNRLLNYILNNGIDKNGSNLYSA-ILSTLRRMLSIDLFSYNRGELDKMLIYWKNMNQYINEITDKVKT : UniRef90_S0KL36
UniRef90_V5XTF5 : MNYEQTERIESLNEFSKGITARLIAYLSKENIPIDTPNNFYVLLYQQFKEMLNLNLFSLSDTDLKRVEQYWQKMNDLVSDISK---- : UniRef90_V5XTF5
UniRef90_Q93NB3 : LDYRKTFEIEIINEFQSAIHSKMLNYVLNNELDKSDSTNLQTNLLNQLSNMNQINLFKLSLEELEAYHEYLRSIKKYADSIT----- : UniRef90_Q93NB3
UniRef90_R2RVH2 : ISYEKTFEIEIINELSASVYNRVLNYVLNHELDTDNTQLLEVNLLNQLKLAKRVNLFEYSLDEL----------------------- : UniRef90_R2RVH2
UniRef90_E8LH29 : ---------------------------MNHELNKNDSQLLEVNLLNQLKLAKRVNLFDIKLRVVPLVQYVLDKAKENTSYCPKKVKV : UniRef90_E8LH29
UniRef90_K8F510 : ---------------------------MNHELDTKNTRLLEVNLLNQLEVAQEVDLFQQPFEELQAIHEYWRSMNQYSKQILTKEKV : UniRef90_K8F510
UniRef90_D4QQC7 : ---------------------------MNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLNKEKV : UniRef90_D4QQC7
UniRef90_G7S6D2 : VTYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKL------------------------------------- : UniRef90_G7S6D2
: 1---------11--------21--------31--------41--------51--------61--------71--------81----- :
OrigSeq : VTYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLNKEKV : OrigSeq
Jnet : ---HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------- : Jnet
jhmm : --HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHHHH------- : jhmm
jpssm : ----HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------- : jpssm
Lupas 14 : --------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : --------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : --------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : --B--BB-B-BBB-BB--BBB-BBBBBB---B-------BBB-BB-BB--BB-B-BB-B---BB--B--BB--B--BB--B------ : Jnet_25
Jnet_5 : -----------B--B-------BB-BB------------B-B-BB--B--B----B-------B--B--BB--B------------- : Jnet_5
Jnet_0 : ----------------------B--------------------------------------------------B------------- : Jnet_0
Jnet Rel : 991415688999999874789999988743678876402789999999999994511477078999999999998776425777899 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.