SILENT_MODE BLOCK_FILE jp_y2uhgRh.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_y2uhgRh.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 165 14 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 15 165 24 H SPACE SUB_CHARS 1 15 165 24 E SPACE SUB_CHARS 1 15 165 24 - SPACE STRAND 86 18 88 COLOUR_TEXT_REGION 86 18 88 18 51 HELIX 5 18 19 COLOUR_TEXT_REGION 5 18 19 18 50 HELIX 29 18 54 COLOUR_TEXT_REGION 29 18 54 18 50 HELIX 63 18 75 COLOUR_TEXT_REGION 63 18 75 18 50 HELIX 96 18 114 COLOUR_TEXT_REGION 96 18 114 18 50 HELIX 119 18 138 COLOUR_TEXT_REGION 119 18 138 18 50 HELIX 146 18 160 COLOUR_TEXT_REGION 146 18 160 18 50 STRAND 86 23 88 COLOUR_TEXT_REGION 86 23 88 23 51 HELIX 5 23 18 COLOUR_TEXT_REGION 5 23 18 23 50 HELIX 29 23 44 COLOUR_TEXT_REGION 29 23 44 23 50 HELIX 46 23 46 COLOUR_TEXT_REGION 46 23 46 23 50 HELIX 48 23 55 COLOUR_TEXT_REGION 48 23 55 23 50 HELIX 65 23 75 COLOUR_TEXT_REGION 65 23 75 23 50 HELIX 96 23 108 COLOUR_TEXT_REGION 96 23 108 23 50 HELIX 111 23 114 COLOUR_TEXT_REGION 111 23 114 23 50 HELIX 119 23 139 COLOUR_TEXT_REGION 119 23 139 23 50 HELIX 146 23 160 COLOUR_TEXT_REGION 146 23 160 23 50 STRAND 51 24 53 COLOUR_TEXT_REGION 51 24 53 24 51 STRAND 86 24 87 COLOUR_TEXT_REGION 86 24 87 24 51 HELIX 4 24 19 COLOUR_TEXT_REGION 4 24 19 24 50 HELIX 29 24 50 COLOUR_TEXT_REGION 29 24 50 24 50 HELIX 62 24 75 COLOUR_TEXT_REGION 62 24 75 24 50 HELIX 96 24 114 COLOUR_TEXT_REGION 96 24 114 24 50 HELIX 119 24 137 COLOUR_TEXT_REGION 119 24 137 24 50 HELIX 146 24 160 COLOUR_TEXT_REGION 146 24 160 24 50