Jpred secondary structure prediction results

QUERY                  : GSLTNKVVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANKYIQNTP : QUERY 
UniRef90_H7E9H1        : --LTNKIVKDFMLHKLNSLDIQGNASKDTAYARQTCEAMLSGVYSNNKDKYCNLLISKGVSITPFLKEIGEAAQNAGLPGETKNDIFTPGGAGANPFVIPLIASASMTYPHMFINHSQQVSFKAYAEKIIMKEVTPLFNERSMPTPQEFQLTVENIASKYLQD-- : UniRef90_H7E9H1
UniRef90_F8VGD4        : --LTRKIVKEHMQQKLNELDIKSHASKDPSYARQTCEAILSAQYSNNKDKYCRLLINQGLSITPFLKEIGEAAQNAGLPGEIKNGVFTPGGAGANPFITPLVSSASIKYPYTFINHNQQTSFKAYAEKLIMEEVTPLFKEQNLPTPQQFHLTLENIASKYIQNT- : UniRef90_F8VGD4
UniRef90_UPI00046CF809 : --IDSKVTRDFITKKLLELDLPGKAKEDPVYAKQACDAVLASVYSNKKDVFCKEMISKGIDISGYLKDVGAAALQAGLEGKIDNDTFIPTGAGANPFVTAVISSAQLKFPLVFLNKNQQGFFKQYAEKKISCEVGKICKDNGFISPVEFGVMLDKIASRYL---- : UniRef90_UPI00046CF809
UniRef90_X2LK35        : ----------------------------------TCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIGEAAQNAELPGEIKNGVFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGTMPTPQQFQLTIENIANKYLQN-- : UniRef90_X2LK35
UniRef90_B0G0X4        : --LTNKVVKNFLLQTLHDIDIRGSASKDPAYASQTREAILSAVYSKYKDQYCNLLISKGIDIAPFLKEIGEAAQNAGLPGATKNDVFTPSGAGANPFITPLITSAYSKYPHMFTSQHQKAS-------------------------------------------- : UniRef90_B0G0X4
UniRef90_Q7P1B7        : -------VKAMIRSRLDSLR-DGMA--DPVYRRQALESTYATIYSEAKQAFYR--ANGGKMPEGYLRELGEAARAAGLPGENKHGVFIPSGDGASPFVNYLLIPVQKEFGHRLRNESQQRLFRDFARQLSMELVAPHAAERGWEPPAAFAARLEAVGRPWL---- : UniRef90_Q7P1B7
UniRef90_A3MCH6        : --------------------------QDAEFGRQVYEATLCAIFSEAKDRFCMDPATRAGNVRPFIEALGDAARATGLPGADKQGVFTPSGAGTNPLYTEIRLRADTLMGAELAARPEYRELQPYARQQAIDLVAPAERSNTLVEFRQTVQTLEATYRRAAQD-- : UniRef90_A3MCH6
UniRef90_X3EU12        : -----------------------------------------------------------------MKEIGEAAQNAELPGEIKNGVFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGTMPTPQQFQLTIENIANKYLQN-- : UniRef90_X3EU12
UniRef90_UPI00016A5B8F : ----------------------------------------------------MDPATREGNVRPFVAALGDAARATGLPGADKQGVFTPSGAGTNPLYTEIRLRADTLMGAELAARPEYRELQSYARQQAIDLVANALPAGHSGTLARFRQTVQTLDATY----- : UniRef90_UPI00016A5B8F
UniRef90_X2N752        : ------------------------------------------------------------------------AKIGFLPGQYINLHYTRSYSIANSDESNGIEXXXSKYPHMFTSQHQKASFNIYAEKIIMTEVVPLFNECAMPTPQQFQQILENIANKYIQN-- : UniRef90_X2N752

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-- :
OrigSeq                : GSLTNKVVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANKYIQNTP : OrigSeq

Jnet                   : ----HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH----------EEE-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----- : Jnet
jhmm                   : ----HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH-H-HHHHHHHH---------HHHHHHHHHHH----------EEE-------HHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH----- : jhmm
jpssm                  : ---HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHEEE--------HHHHHHHHHHHHHH----------EE--------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH----- : jpssm

Lupas 14               : --------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : --------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : --------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : --B---BB--BB---B--B-B---B-----BB--BB-BBBBBBBB--B--BB---B-----B-BBB--BB-BB--B-B-B-----BBBBBB-BBBBBBB-BBB-B---BBB-B--------B--BB--BBB-BBB-BB----B--B--BB-BB--BB--BB---- : Jnet_25
Jnet_5                 : -------B---B---B------------------B---BBB-B-------BB---B--------BB--B---B-------------B-----B----B--B---B-------B------------B---B---B---B----------B---B------------ : Jnet_5
Jnet_0                 : ---------------------------------------------------B----------------B-----------------------------------------------------------------------------------B------------ : Jnet_0
Jnet Rel               : 997289999999988877116888875378999999999999883735414332077876301399999999985167777776322067777642678799875115207764277613899999999999987643178876378999999987545247999 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.