SILENT_MODE BLOCK_FILE jp_AxS8sII.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_AxS8sII.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 124 6 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 7 124 16 H SPACE SUB_CHARS 1 7 124 16 E SPACE SUB_CHARS 1 7 124 16 - SPACE STRAND 63 10 67 COLOUR_TEXT_REGION 63 10 67 10 51 STRAND 104 10 105 COLOUR_TEXT_REGION 104 10 105 10 51 STRAND 110 10 115 COLOUR_TEXT_REGION 110 10 115 10 51 HELIX 3 10 12 COLOUR_TEXT_REGION 3 10 12 10 50 HELIX 19 10 28 COLOUR_TEXT_REGION 19 10 28 10 50 HELIX 40 10 51 COLOUR_TEXT_REGION 40 10 51 10 50 HELIX 53 10 56 COLOUR_TEXT_REGION 53 10 56 10 50 HELIX 78 10 85 COLOUR_TEXT_REGION 78 10 85 10 50 HELIX 87 10 94 COLOUR_TEXT_REGION 87 10 94 10 50 STRAND 19 15 23 COLOUR_TEXT_REGION 19 15 23 15 51 STRAND 63 15 67 COLOUR_TEXT_REGION 63 15 67 15 51 STRAND 104 15 105 COLOUR_TEXT_REGION 104 15 105 15 51 STRAND 110 15 114 COLOUR_TEXT_REGION 110 15 114 15 51 HELIX 3 15 12 COLOUR_TEXT_REGION 3 15 12 15 50 HELIX 40 15 56 COLOUR_TEXT_REGION 40 15 56 15 50 HELIX 78 15 84 COLOUR_TEXT_REGION 78 15 84 15 50 HELIX 87 15 94 COLOUR_TEXT_REGION 87 15 94 15 50 HELIX 106 15 107 COLOUR_TEXT_REGION 106 15 107 15 50 HELIX 115 15 117 COLOUR_TEXT_REGION 115 15 117 15 50 STRAND 53 16 56 COLOUR_TEXT_REGION 53 16 56 16 51 STRAND 64 16 68 COLOUR_TEXT_REGION 64 16 68 16 51 STRAND 104 16 106 COLOUR_TEXT_REGION 104 16 106 16 51 STRAND 110 16 115 COLOUR_TEXT_REGION 110 16 115 16 51 HELIX 4 16 12 COLOUR_TEXT_REGION 4 16 12 16 50 HELIX 18 16 30 COLOUR_TEXT_REGION 18 16 30 16 50 HELIX 42 16 50 COLOUR_TEXT_REGION 42 16 50 16 50 HELIX 78 16 94 COLOUR_TEXT_REGION 78 16 94 16 50