QUERY           : VSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFDSTTAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPAATWT : QUERY 
UniRef90_G8EFI3 : ----FMLEAYVNVISNNKVLLKLVPLWLPLGVAGQDLYSFDSTASALLIASYTITHFGMTTRPLVRVNRLGPGIPDHPLHLLRLGNQAFLQELVLPPLQLPQFFTFELTELRLYTHLMPQTIW- : UniRef90_G8EFI3
UniRef90_Q1PD51 : VCHAFTLEAIIDISAYNERTVKGVPAWLPLGIMSNFEYPLAHTVAALLTGSYTITQFTHNGQKFVRVNRLGTGIPAHPLRMLREGNQAFIQNMVIPRNFSTNQFTYNLTNLVLSVQKLPDDAW- : UniRef90_Q1PD51

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121- :
OrigSeq         : VSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFDSTTAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPAATWT : OrigSeq

Jnet            : --HHHHHHHHHH------HHHHHHHHHH-----------HHHHHHHHHHHH-HHHH------EEEEE----------HHHHHHHH-HHHHHHHH---------EE----EEEEEE--------- : Jnet
jhmm            : --HHHHHHHHHH------EEEEE----------------HHHHHHHHHHHHHHHHH------EEEEE----------HHHHHHH--HHHHHHHH---------EEHH--EEEEEHHH------- : jhmm
jpssm           : ---HHHHHHHHH-----HHHHHHHHHHHHH-----------HHHHHHHHH--EEEE-------EEEEE---------HHHHHHHHHHHHHHHHH---------EEE---EEEEEE--------- : jpssm

Lupas 14        : ---------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---BBBBBBBB-BB----BBB--BBBBBBBBBB----B-B--BBBBBBBBBBBBB-BB-----BB-BB-BB-BB--BBBBBB--BB-BBB--BBBB------BBBB-BB-BBBBB--B----B- : Jnet_25
Jnet_5          : ------B-BBB-B-------B------B-B-------------BBBBB----------------B-B-----------B-BB-------B--BB-------------B--B-B-B--------- : Jnet_5
Jnet_0          : --------B---------------------------------------------------------B-------------------------------------------B------------- : Jnet_0
Jnet Rel        : 9917777754420688612111213231021468877662407888876310321105778715776157777776417888631179998862367877752440242157873137777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.