SILENT_MODE
BLOCK_FILE jp_zC3305H.concise.blc
MAX_NSEQ 938
MAX_INPUT_LEN 940
OUTPUT_FILE jp_zC3305H.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 111 927   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 928 111 937 H SPACE
SUB_CHARS 1 928 111 937 E SPACE
SUB_CHARS 1 928 111 937 - SPACE
STRAND 3 931 7
COLOUR_TEXT_REGION 3 931 7 931 51
STRAND 11 931 19
COLOUR_TEXT_REGION 11 931 19 931 51
STRAND 43 931 47
COLOUR_TEXT_REGION 43 931 47 931 51
STRAND 75 931 79
COLOUR_TEXT_REGION 75 931 79 931 51
STRAND 98 931 99
COLOUR_TEXT_REGION 98 931 99 931 51
HELIX 25 931 37
COLOUR_TEXT_REGION 25 931 37 931 50
HELIX 54 931 71
COLOUR_TEXT_REGION 54 931 71 931 50
HELIX 84 931 91
COLOUR_TEXT_REGION 84 931 91 931 50
HELIX 103 931 109
COLOUR_TEXT_REGION 103 931 109 931 50
STRAND 3 936 7
COLOUR_TEXT_REGION 3 936 7 936 51
STRAND 11 936 19
COLOUR_TEXT_REGION 11 936 19 936 51
STRAND 43 936 47
COLOUR_TEXT_REGION 43 936 47 936 51
STRAND 75 936 79
COLOUR_TEXT_REGION 75 936 79 936 51
STRAND 98 936 99
COLOUR_TEXT_REGION 98 936 99 936 51
HELIX 25 936 37
COLOUR_TEXT_REGION 25 936 37 936 50
HELIX 54 936 71
COLOUR_TEXT_REGION 54 936 71 936 50
HELIX 85 936 91
COLOUR_TEXT_REGION 85 936 91 936 50
HELIX 103 936 109
COLOUR_TEXT_REGION 103 936 109 936 50
STRAND 2 937 7
COLOUR_TEXT_REGION 2 937 7 937 51
STRAND 11 937 20
COLOUR_TEXT_REGION 11 937 20 937 51
STRAND 43 937 47
COLOUR_TEXT_REGION 43 937 47 937 51
STRAND 53 937 53
COLOUR_TEXT_REGION 53 937 53 937 51
STRAND 75 937 80
COLOUR_TEXT_REGION 75 937 80 937 51
STRAND 97 937 99
COLOUR_TEXT_REGION 97 937 99 937 51
HELIX 23 937 37
COLOUR_TEXT_REGION 23 937 37 937 50
HELIX 56 937 71
COLOUR_TEXT_REGION 56 937 71 937 50
HELIX 84 937 92
COLOUR_TEXT_REGION 84 937 92 937 50
HELIX 103 937 109
COLOUR_TEXT_REGION 103 937 109 937 50