SILENT_MODE BLOCK_FILE jp_zC3305H.concise.blc MAX_NSEQ 938 MAX_INPUT_LEN 940 OUTPUT_FILE jp_zC3305H.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 111 927 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 928 111 937 H SPACE SUB_CHARS 1 928 111 937 E SPACE SUB_CHARS 1 928 111 937 - SPACE STRAND 3 931 7 COLOUR_TEXT_REGION 3 931 7 931 51 STRAND 11 931 19 COLOUR_TEXT_REGION 11 931 19 931 51 STRAND 43 931 47 COLOUR_TEXT_REGION 43 931 47 931 51 STRAND 75 931 79 COLOUR_TEXT_REGION 75 931 79 931 51 STRAND 98 931 99 COLOUR_TEXT_REGION 98 931 99 931 51 HELIX 25 931 37 COLOUR_TEXT_REGION 25 931 37 931 50 HELIX 54 931 71 COLOUR_TEXT_REGION 54 931 71 931 50 HELIX 84 931 91 COLOUR_TEXT_REGION 84 931 91 931 50 HELIX 103 931 109 COLOUR_TEXT_REGION 103 931 109 931 50 STRAND 3 936 7 COLOUR_TEXT_REGION 3 936 7 936 51 STRAND 11 936 19 COLOUR_TEXT_REGION 11 936 19 936 51 STRAND 43 936 47 COLOUR_TEXT_REGION 43 936 47 936 51 STRAND 75 936 79 COLOUR_TEXT_REGION 75 936 79 936 51 STRAND 98 936 99 COLOUR_TEXT_REGION 98 936 99 936 51 HELIX 25 936 37 COLOUR_TEXT_REGION 25 936 37 936 50 HELIX 54 936 71 COLOUR_TEXT_REGION 54 936 71 936 50 HELIX 85 936 91 COLOUR_TEXT_REGION 85 936 91 936 50 HELIX 103 936 109 COLOUR_TEXT_REGION 103 936 109 936 50 STRAND 2 937 7 COLOUR_TEXT_REGION 2 937 7 937 51 STRAND 11 937 20 COLOUR_TEXT_REGION 11 937 20 937 51 STRAND 43 937 47 COLOUR_TEXT_REGION 43 937 47 937 51 STRAND 53 937 53 COLOUR_TEXT_REGION 53 937 53 937 51 STRAND 75 937 80 COLOUR_TEXT_REGION 75 937 80 937 51 STRAND 97 937 99 COLOUR_TEXT_REGION 97 937 99 937 51 HELIX 23 937 37 COLOUR_TEXT_REGION 23 937 37 937 50 HELIX 56 937 71 COLOUR_TEXT_REGION 56 937 71 937 50 HELIX 84 937 92 COLOUR_TEXT_REGION 84 937 92 937 50 HELIX 103 937 109 COLOUR_TEXT_REGION 103 937 109 937 50