SILENT_MODE
BLOCK_FILE jp_Rr79C0d.concise.blc
MAX_NSEQ 311
MAX_INPUT_LEN 313
OUTPUT_FILE jp_Rr79C0d.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 103 300   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 301 103 310 H SPACE
SUB_CHARS 1 301 103 310 E SPACE
SUB_CHARS 1 301 103 310 - SPACE
STRAND 6 304 8
COLOUR_TEXT_REGION 6 304 8 304 51
HELIX 9 304 39
COLOUR_TEXT_REGION 9 304 39 304 50
HELIX 44 304 81
COLOUR_TEXT_REGION 44 304 81 304 50
HELIX 89 304 101
COLOUR_TEXT_REGION 89 304 101 304 50
STRAND 6 309 9
COLOUR_TEXT_REGION 6 309 9 309 51
HELIX 10 309 39
COLOUR_TEXT_REGION 10 309 39 309 50
HELIX 44 309 81
COLOUR_TEXT_REGION 44 309 81 309 50
HELIX 89 309 101
COLOUR_TEXT_REGION 89 309 101 309 50
STRAND 6 310 7
COLOUR_TEXT_REGION 6 310 7 310 51
HELIX 8 310 39
COLOUR_TEXT_REGION 8 310 39 310 50
HELIX 44 310 60
COLOUR_TEXT_REGION 44 310 60 310 50
HELIX 63 310 80
COLOUR_TEXT_REGION 63 310 80 310 50
HELIX 88 310 101
COLOUR_TEXT_REGION 88 310 101 310 50