SILENT_MODE
BLOCK_FILE jp_KvSrPx1.concise.blc
MAX_NSEQ 964
MAX_INPUT_LEN 966
OUTPUT_FILE jp_KvSrPx1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 115 953   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 954 115 963 H SPACE
SUB_CHARS 1 954 115 963 E SPACE
SUB_CHARS 1 954 115 963 - SPACE
HELIX 3 957 11
COLOUR_TEXT_REGION 3 957 11 957 50
HELIX 15 957 32
COLOUR_TEXT_REGION 15 957 32 957 50
HELIX 38 957 57
COLOUR_TEXT_REGION 38 957 57 957 50
HELIX 66 957 90
COLOUR_TEXT_REGION 66 957 90 957 50
HELIX 99 957 112
COLOUR_TEXT_REGION 99 957 112 957 50
HELIX 3 962 12
COLOUR_TEXT_REGION 3 962 12 962 50
HELIX 15 962 32
COLOUR_TEXT_REGION 15 962 32 962 50
HELIX 38 962 57
COLOUR_TEXT_REGION 38 962 57 962 50
HELIX 66 962 90
COLOUR_TEXT_REGION 66 962 90 962 50
HELIX 97 962 112
COLOUR_TEXT_REGION 97 962 112 962 50
HELIX 3 963 11
COLOUR_TEXT_REGION 3 963 11 963 50
HELIX 15 963 32
COLOUR_TEXT_REGION 15 963 32 963 50
HELIX 38 963 57
COLOUR_TEXT_REGION 38 963 57 963 50
HELIX 66 963 90
COLOUR_TEXT_REGION 66 963 90 963 50
HELIX 99 963 112
COLOUR_TEXT_REGION 99 963 112 963 50