Jpred secondary structure prediction results

QUERY           : ADKLFINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQMWDDIRRTVIVGLNHAHAVIEKRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAFVIDINKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAKHAEVIHMGTYLPV : QUERY 
UniRef90_Q58256 : --RLFLKALKEKFEEDPREKYTKFYVFGGWRQSARKREFVEAAQKLIEKRGIPFYNPDIGVPLGQRKLMPYKVSNTDAIVEGDDLHFMNNAAMQQFWDDIRRTVIVGMDTAHAVLEKRLGVEVTPETINEYMETINHALPGGAVVQEHMVEVHPALVWDCYAKIFTGDDELADEIDKRFLIDINKLFPEEQAEQIKKAIGKRTYQVSRVPTLVGRVCDGGTIARWSAMQIGMSFITAYKLCAGEAAIADFSYAAKHADVIQMASFLPA : UniRef90_Q58256
UniRef90_R9SLW2 : ADKKFYEALNKKFKESPEDKTTTFYNLGGWKQSERKTQFYEAGKEIAEERGIPMYNPDIGSPLGQRTLMPYQLSTTDTFVEGDDLHFINNAAIQQLWDDIRRTVLVGLNTAHNVLQRRLGMEVTPETITNYLETVNHAMPGAAVVQEHMVETNPYLVSDSYVKIFTGDDELADEIDQCYVLDINKEFPDDQAAQLKAEVGDKIWQVVRVPSLVGRVCDGGTTSRWSAMQIGMSMISAYNQCAGEGATGDFAFATKHAEVIQMGAPLP- : UniRef90_R9SLW2
UniRef90_B8GE93 : SQKLFLKALKEKFAGEDPAGEHTHFARAGLEQSERKREFMKEGKKVEMERGISQYDPKRGIPLGQRQLMTYEISGTGTFVEGDDLHFVNNAAMQQMWDDIRRTIIVGMDLAHNTLQKRLGKEVTPETINEYLHILNHAMPGAAVVQEHMVETHPSLVSDCYVKVFTGDDEVADQIEPQYLLNIEKLFPAKSAEKLKAAVGKSMFQAIHIPTTVSRTCDGGTTSRWSAMQIGMSFIAAYRMCAGEAAVADLSYAAKHAGVIQMADILPA : UniRef90_B8GE93
UniRef90_Q49605 : -EKLFMKALKEKFEESPEEKYTKFYIFGGWKQSERKKEFKEWADKIVEERGVPHYNPDIGVPLGQRKLMSYQVSGTDVFVEGDDLHFVNNAAMQQMWDDIRRTVIVGMDTAHRVLERRLGKEVTPETINEYMETLNHALPGGAVVQEHMVEIHPGLTWDCYAKIITGDLELADEIDDKFLIDIEKLFPEEQAEQLIKAIGNRTYQVCRMPTIVGHVCDGATMYRWAAMQIAMSFICAYKIAAGEAAVSDFAFASKHAEVINMGEMLPA : UniRef90_Q49605
UniRef90_A2SSD1 : TQKLFLDALKQKFKQDVASVQTEFYKFNGVQQSPRKREFMAENKKIEAARGISMYDPEHGIPMGQRQLMTYEVSGTGTFVEGDDLHFVNNAAMQQMWDDIRRTVIVSMDMAHQTLQKRLGKEVTPETINEYLHVVNHAMPGGAVVQEHMVETHPGLTDDCYVRVFTGDQELADNLEPQFVIDVEKLFPKKQAEALQAAVGKSLWQCVHMPTIVGRTCDGGTTSRWSAMQIGMSFIAAYRMCAGEAAVADLSFAAKHAGVINMAHHLPA : UniRef90_A2SSD1
UniRef90_A5ULM9 : -EKVFFKALNQKFKEDNESNHTSFYCFDGWKQSPRKREFNDAAEKLAKDRNMPFYNPDIGVPLGQRSLMTYKISGTDDYVEGDDLHFCNNAAIQQLVDDIKRTIIVGMDTAHSVLQERLGVEVTPETINEYMENINHALPGGAVVQEHMVEVHPGLVSDCYAKIFTGNDELADEIDKRVLIDINKEFPEDQAQMLKDYLGNKTYQVSRVPTLVVRACDGGTVSRWSAMQIGMSFINAYKLCAGEAAIADFSYAAKHADVIGMASFLPA : UniRef90_A5ULM9
UniRef90_R9TAZ9 : ADKLFMDAMKKKFKEDPTDEYTSYYTFGGWKQSKRKREWVEQANAIAKARGIPMMNQDIGVPLGQRVLMPYQLSHTDMYAEADDLHFVNNAAIQQAWDDIRRTVIVGLDTAHTVIEKRLGKEVTPETINNYLETVNHAMPGGAVVQEHMAECSPALTADCYVKVFSGNSELIDQLDKRFVIDINKEFPEDQAKQLNDAIGKSLYQVVRCPTIVGRVCDGGTMSRWSAMQISMSFISAYRLAAGEAAIADFAYAAKHASVVEMGTMMPA : UniRef90_R9TAZ9
UniRef90_P07962 : ---KFKKDMEVKFAGDITDKTAKFLRL-GPEQDPRKVEMIKAGKEIAEKRGIAFYNPMMGAPLGQRAITPYTISGTDIVCEPDDLHYVNNAAMQQMWDDIRRTCIVGLDMAHETLEKRLGKEVTPETINHYLEVLNHAMPGAAVVQEMMVETHPALVDDCYVKVFTGDDALADEIDKQFLIDINKEFSEEQAAQIKASIGKTSWQAIHIPTIVSRTTDGAQTSRWAAMQIGMSFISAYAMCAGEAAVADLSFAAKHAALVSMGEMLPA : UniRef90_P07962
UniRef90_D5EAD6 : --RMFQKDLEVKFGGDITDMRIPYYRL-GVDQNPRKLEMKKVGKDIAEKRGLAGYNPMMGIPLGQRALTPSFISGNDMMVENDDLHYVNNAAMQQMWDDIRRTCIVGMDMAHETLEKRLSIEVTPETINHYLEVLNHALPGGAVVQEHMVESHPALVDDCYVKIFTGDDELADEIDDQFLIDIDKQFPAEQAEQLKASIGNTTWQAAHIPTIVSRTTDGGQTTRWTAMQIGMSYIAAYGMCAGEAAVADLSYAAKHAGVVNMGDMLPA : UniRef90_D5EAD6
UniRef90_D1YVW6 : TQKRFIKAMKKKFAGEDPTSTTTVYKYEGYTQSKRKVEFKKAGDAIAKKRGISAYNPMVGIPLGQRQLTPYVVSGTDVVVEGDDLHFVNNAAMQQFWDEIRRTVIVGLDTAHATLEKRLGKTVTPETISNYLAILNHAMPGAAVVQEHMVETNPALTDDCFVKVFTGDDELADSIDKQYVLDINKAFPKDQAAALKKAVGKSLYQAVHIPTTVVRTCDGGTTSRWSAMQIGMSFIDAYKMCAGEAAVADLAFAAKHASLVEMADILPA : UniRef90_D1YVW6
UniRef90_M9SBG6 : -EKLFLEACKKKFKEDPTSMETKYYCYGGWKQSKSKVEFQKEAMEIAKKRGFPMMNEDIGVPLGQRSWMPYQLSHTDIFVEPDDLHCINNPAIQQAWDDIRRTVLVGLDSPHQTIERRLGKEVTPETINAYLETVNHTMPGGAVVQEHMAECNPALVYDSYVKVFSGDDELIDELDPRFVIDINKNFPKDQAEKLKKAIGKTVMQAVRVPTMVGRVMDGATVSRHAAMQISMAFISSYKLAAGEAAIADFAYSAKHMS-INMGSMMPA : UniRef90_M9SBG6
UniRef90_M1PSV0 : ----------------------TVYERKGLEQSPRKVEFMKAGKKAEMDRGISMYDPKRGIPLGQRQLTTYEVSTTGVFVEGDDLHFVNNAAMQQMWDDIRRTIIVGLDLAHNTLQKRLGKEVTPETINEYLHVLNHAMPGAAVVQEHMVETHPSLVDDCYVKVFTGDDEMADDLEPQFVLDIDKLFPAKMAAQLKAAVGKSMWQAVHIPTTVSRTCDGGTTSRWSAMQIGMSFIGAYKMCAGEAAVADLAFAAKHAGVIQMADILPA : UniRef90_M1PSV0
UniRef90_D7E8X7 : -ERRFKKELERKFTQEFGDDKKTEYQRMGVAQSPRKMEMLKAGQELSKKRGLVGYNPDLGVQLGQRALTPSYLSGTDMLTEMDDLHYVNNAAMQQMWDDIRRTCIVGMDSAHETLEKRLGIEVTPETINHYLEVLNHAIPGGAVVQEHMVETHPGLTEDCYVKIFTGDDDLADEIDDQFLIDIDKEFPEDQAQQLKESIGKTTWQVAHIPTVVSRTTDGGQTRRWMAMQLGMSFINAYHMCAGEAAVADLSYAAKHASVINMGEMLPA : UniRef90_D7E8X7
UniRef90_G7WN24 : TKKLFVKALNKKFGRDFDSGTKTVYERLGPEQNARKREFMEASKKLEGKRGISMYNPYLGVPLGQRQLVPYKLSTTEYIVEGDDLHFVNNPAMQQMWDDIRRTIVVGLDMAHEVLEKRLGKEVTPETINNYLEILNHAMPGAAVVQEHMVETHPALVDDCNVRMFTGDDDLADEIDDQYLIDVNKLFPAEQAEEIKAAMGKTSWQAIHIPTIVSRTCDGGTTSRWSAMQLSMTFIDAYNMCAGEAAVADLAFAAKHAAVIQMADMLPA : UniRef90_G7WN24
UniRef90_Q64D16 : ----FLKAMSDKFAEKPEDTKTKFYVYGGIAQGMRKREFIDEAKKMVEGRSTPGYNPDVGMPQGQRYLMPYMMNHTDIMVNADDLHWINNAAMQQCWDDMKRGIVLGLDDAHGLLEARLGKEVTPDTISHYMEVLNHALPGGAVIQEHMVETKPMLVNDSYAKLFTGDDDLADAVDRRFILDINKEFPGEQAEQLKEAIGKKIWQILWMPTVVGRMTDGGTMFRWVGMQVGMSMINAYKMCAGESATGEFAYYAKHSAVVRLSNFMPV : UniRef90_Q64D16
UniRef90_Q648Y3 : SEKIFVEALKAKFAGLDLSETRVEYKRAGYVQNARKREFQAAGERVAEQRGMKQYDVNVGMTLGQRQLVPYKLSTTPDIVEGDDLHYVNNPAMQQMWDDIKRTIVVGMDLAHETLEKRLGKEVTPESIAGYMEAVNHTMPGAAIVQEHMVETHPGLVDDCYVKMFTGDDELADEIDSQYVININDLFDKEQNDTIKAAIGKTTWQAVHIPTIVVRCCDGGNTSRWSAMQIGMSFIAAYNMCAGEAAVADLAFAAKHAAAVQMAEMLPA : UniRef90_Q648Y3
UniRef90_M1PT14 : -----------------------------------------------------------GIPLGQRQLTTYEVSTTGVFVEGDDLHFVNNAAMQQMWDDIRRTIIVGLDLAHQTLQKRLGKEVTPETINEYLHVLNHAMPGAAVVQEHMVETHPALTEDCYVKVFTGDDEMADDLEPQFVLNIDKLFPTKMAAQLKAAVGKSMWQAVHIPTTVSRTCDGGTTSRWSAMQIGMSFIGAYKMCAGEAAVADLAFAAKHAGVIQMADILPA : UniRef90_M1PT14
UniRef90_L0HTU9 : -----------------------------------------------------------------------------------DLHYVNNAAMQQMWDDIRRTCIVGLDMAHETLEKRLGKEVTPETINHYLEVLNHAMPGAAVVQEMMVETHPALVDDCYVKVFTGDDELADEIDKQYVININKMFSEEQAAQIKASIGKTSRQAIHIPTIVSRTTDGAQTSRWAAMQIGMSFISAYAMCAGEAAVADLSFAAKHAALVSMGEMLPA : UniRef90_L0HTU9
UniRef90_H7CHY5 : ------------------------------------------------------------------------------------------AAMQQFWDNIRRTVIVGMDLAHATLQKRLGKEVTPETINEYLHILNHAMPGAAVVQEHMVETHPGLVDDCYVKVFTGDDEMADDIEPQFLINVEKLFPAEQAEVLKAEVGKSMYQAIHIPTIVSRTCDGGTTSRWSAMQIGMSFIAAYRMCAGEAAVADLSFAAKHAGVVQMASHLPA : UniRef90_H7CHY5
UniRef90_H7CHY2 : ------------------------------------------------------------------------------------------AAIQQMVDDIKRTVIVGMDTAHAVLEKRLGVEVTPETINEYMEVINHALPGGAVVQEHMVEVHPGIVEDCYAKVFTGDDNLADELDKRILIDINKEFPEEQAEQLKSYIGNRTYQVNRVPTIVVRACDGGTVSRWSAMQIGMSFISAYKLCAGEAAIADFSFAAKHADVIEMGTIMPA : UniRef90_H7CHY2
UniRef90_M1Q864 : ----------------------------------------------------------------------------------DDLHFVNNAAMQQCWDDIRRTVISGLDTAHNVIEKRLQKEVTPETINHYLETVNHAMPGGAVVQEHMAECSPALTADCYVKVFSGDDELVDEIDKPYRIDINKEFPADQAKQLKEAVGKSLWQVIRCPTIVGRVCDGGTMSRWSAMQISMSFISSYKLAAGEAAIADFAYAAKHASVVEMGTMMPA : UniRef90_M1Q864
UniRef90_H3K2E3 : ------------------------------------------------------------------------------------------PAMQQMWDDIRRTVIVGLDMAHEVLEKRLGKEVTPETINNYLEILNHAMPGAAVVQEHMVETHPGLVDDCNVRMFTGDDDLADEIDSQYLININELFPEEQAEEIKAAMGKTSWQAIHIPTIVSRTCDGGTTSRWSAMQLSMTFIDAYNMCAGEAAVADLAFAAKHAAVIQMGDMLPA : UniRef90_H3K2E3
UniRef90_M1PN18 : -------------------------------------------------------------PLGQRQLTTYEVSGTGVFVEGDDLHFVNNAAMQQMWDDIRRTIIVGLDLAHNTLQKRLGKEVTPETINEYLHVLNHAMHGAAVVQEHMVETHPSLTEDCYVKVFTGDDEMADDLEPQFVLNVDKLFPAKQAAQLKAVVGKSMWQAVHIPTTVSRTCDGGTTSRWS------------------------------------------ : UniRef90_M1PN18
UniRef90_N0DSU2 : ------------------------------------------------------------------------------------------CAIQQSWDDIRRTVLVGLDSPHNTIEKRLGKEVTPETINTYLEIVNHTMPGGAVVQEHMAEINPALVWDSYVKVFSGNDELIDEIDPRFVIDINKLFPKEQADQLKKAIGKTLMQAVRVPTIVGRLMDGGTVSRHAAMQISMAFISAYKLAAGEAAIADFAYSAKHQS-IGMSTMMPA : UniRef90_N0DSU2
UniRef90_Q6TWD8 : -------------------------------------------------------------------------------------------------------VIVGLNTAHTVIEKRLGKEVTPETITHYLGNCNHAMPGAAVVQEHMVETNPSLVADSYVKIFTGNDEISDEVDQRFVININEEFPEEQAKVLKAEVGDGMWQVVKIPTIVSRTCDGGTTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAKHAEVVHMGTYLPV : UniRef90_Q6TWD8
UniRef90_G3FGE5 : ------------------------------------------------------------------------------------------------------------DLAHQTLQKRLGKEVTPETINEYLHVLNHAMPGAAVVQEHMVETHPALTEDCYVKVFTGDDEMADDLEPQFVLNVDKLFPAKQAAQLKAAVGKSMWQAVHIPTTVSRTCDGGTTSRWSAMQIGMSFIGAYKMCAGEAAVADLAFAAKHAGVIQMADILPA : UniRef90_G3FGE5
UniRef90_M1PM63 : ----------------------------------------------------------------------------------------------------------------------------PETINNYLEILNHAMPGAAVVQEHMVETHPGLVDDCNVRVFTGDDALADEIDDQYLIDINKMFPAEQAEALKAAIGKTSWQAIHIPTIVVRSCDGGTTSRWSAMQLCMTFIDAYNMCAGEAAVADLAYAAKHAAVLQMSEMLPA : UniRef90_M1PM63
UniRef90_M1Q8A0 : --------------------------------------------------------------------------------------------------------------------------------NEYLHILNHAMPGAAVVQEHMVETHPGLVDDCYVKVFTGDDEMADDIEPQFLVNIEKLFPGKSAEALKAAVGKSMYQAVHIPTIVSRTCDGGTTSRWSAMQIGMSFISAYHMCAGEAATADLAYAAKHAGVIQMADILPA : UniRef90_M1Q8A0

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261----- :
OrigSeq         : ADKLFINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQMWDDIRRTVIVGLNHAHAVIEKRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAFVIDINKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAKHAEVIHMGTYLPV : OrigSeq

Jnet            : --HHHHHHHHHHH--------EEEEEEE-----HHHHHHHHHHHHHHH-----------------EEEEEEEE----EEE----------HHHHHHHHHHH-EEEE----HHHHHHHHH-----HHHHHHHHHHHH-------HHHHHHH----------EEEEEE---HHHHHH---HEE-------HHHHHHHHHHH--HHHHEEE---EEEEE-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------ : Jnet
jhmm            : --HHHHHHHHHHH--------EEEEEEE------HHHHHHHHHHHHHH-----------------EEEEEEEE----EEE----------HHHHHHHHHHH-EEEE----HHHHHHHHH-----HHHHHHHHHHHH------EEEEHHHH----------EEEEEE--HHHHHHH---HEEE------HHHHHHHHHHH--HHHHHEE---EEEEEE----EEHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------ : jhmm
jpssm           : -HHHHHHHHHHHH--------EEEEEE------HHHHHHHHHHHHHHH-----------------EEEEEEEE-----EE-----EE--HHHHHHHHHHHH--EEEE---HHHHHHHHH-----HHHHHHHHHHHHH------HHHHHHHH---------EEEEEE---HHHHH----EE--------HHHHHHHHHHH-----EEEEE--HHHHH-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH------- : jpssm

Lupas 14        : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ----BB--B---B--------B-BB-B-B------B--B---B--BB----B--B---BBB--B--BBBBB-B----BBB---BBBBBBBBBB--BB--B-BBBBBBB--BB-BB---B---BB--BB--BB-BBBBBB-BBBBBB-BBB-B-B-BB--BBBBBBBB---BB--B---BBB-B---B----B--B---B---BBBBBBBBBBBBBBB-BBBB-BBBBBBBBBBBB-BB-BBBB-BBBBBBBBBB-BBBBB-BB-BBB- : Jnet_25
Jnet_5          : ----B---B---------------B-----------------------------------------------B------B----B--B---BB--B---B---BBBBB--B---B------------B--BB--B---B----BB---B------B---B-B-B--------------B---B-----------B---B---B--BB--B-BBB-B----------BB-BBB--B-B---B----B---BB--B----BB-B------ : Jnet_5
Jnet_0          : -----------------------------------------------------------B---------------------------B---------------B--BB-------------------B---------------------------------B-------------------------------------------B-----------------------------------B-------------------------- : Jnet_0
Jnet Rel        : 7389999999862478888751688740787631899999999999851577777777777765315536875377714436774324507899988875141466156368999987447676258999999873137765111245530577775563478884470033312232012166555278999999985260231165251222331877423899999999999999881167589999999861276532378899 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.