SILENT_MODE BLOCK_FILE jp_pdUmioB.concise.blc MAX_NSEQ 998 MAX_INPUT_LEN 1000 OUTPUT_FILE jp_pdUmioB.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 74 987 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 988 74 997 H SPACE SUB_CHARS 1 988 74 997 E SPACE SUB_CHARS 1 988 74 997 - SPACE STRAND 18 991 22 COLOUR_TEXT_REGION 18 991 22 991 51 STRAND 41 991 44 COLOUR_TEXT_REGION 41 991 44 991 51 STRAND 55 991 58 COLOUR_TEXT_REGION 55 991 58 991 51 STRAND 64 991 71 COLOUR_TEXT_REGION 64 991 71 991 51 HELIX 7 991 14 COLOUR_TEXT_REGION 7 991 14 991 50 HELIX 27 991 37 COLOUR_TEXT_REGION 27 991 37 991 50 STRAND 18 996 22 COLOUR_TEXT_REGION 18 996 22 996 51 STRAND 41 996 44 COLOUR_TEXT_REGION 41 996 44 996 51 STRAND 55 996 58 COLOUR_TEXT_REGION 55 996 58 996 51 STRAND 64 996 71 COLOUR_TEXT_REGION 64 996 71 996 51 HELIX 7 996 14 COLOUR_TEXT_REGION 7 996 14 996 50 HELIX 27 996 37 COLOUR_TEXT_REGION 27 996 37 996 50 STRAND 3 997 4 COLOUR_TEXT_REGION 3 997 4 997 51 STRAND 18 997 22 COLOUR_TEXT_REGION 18 997 22 997 51 STRAND 40 997 43 COLOUR_TEXT_REGION 40 997 43 997 51 STRAND 55 997 58 COLOUR_TEXT_REGION 55 997 58 997 51 STRAND 64 997 71 COLOUR_TEXT_REGION 64 997 71 997 51 HELIX 7 997 14 COLOUR_TEXT_REGION 7 997 14 997 50 HELIX 27 997 37 COLOUR_TEXT_REGION 27 997 37 997 50