SILENT_MODE
BLOCK_FILE jp_C3Z3NvR.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_C3Z3NvR.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 135 23   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 24 135 33 H SPACE
SUB_CHARS 1 24 135 33 E SPACE
SUB_CHARS 1 24 135 33 - SPACE
HELIX 4 27 20
COLOUR_TEXT_REGION 4 27 20 27 50
HELIX 22 27 30
COLOUR_TEXT_REGION 22 27 30 27 50
HELIX 34 27 44
COLOUR_TEXT_REGION 34 27 44 27 50
HELIX 51 27 62
COLOUR_TEXT_REGION 51 27 62 27 50
HELIX 69 27 78
COLOUR_TEXT_REGION 69 27 78 27 50
HELIX 94 27 103
COLOUR_TEXT_REGION 94 27 103 27 50
HELIX 106 27 131
COLOUR_TEXT_REGION 106 27 131 27 50
HELIX 3 32 20
COLOUR_TEXT_REGION 3 32 20 32 50
HELIX 22 32 30
COLOUR_TEXT_REGION 22 32 30 32 50
HELIX 32 32 32
COLOUR_TEXT_REGION 32 32 32 32 50
HELIX 34 32 44
COLOUR_TEXT_REGION 34 32 44 32 50
HELIX 51 32 62
COLOUR_TEXT_REGION 51 32 62 32 50
HELIX 70 32 78
COLOUR_TEXT_REGION 70 32 78 32 50
HELIX 95 32 104
COLOUR_TEXT_REGION 95 32 104 32 50
HELIX 106 32 132
COLOUR_TEXT_REGION 106 32 132 32 50
HELIX 4 33 20
COLOUR_TEXT_REGION 4 33 20 33 50
HELIX 22 33 31
COLOUR_TEXT_REGION 22 33 31 33 50
HELIX 34 33 44
COLOUR_TEXT_REGION 34 33 44 33 50
HELIX 50 33 63
COLOUR_TEXT_REGION 50 33 63 33 50
HELIX 68 33 78
COLOUR_TEXT_REGION 68 33 78 33 50
HELIX 94 33 102
COLOUR_TEXT_REGION 94 33 102 33 50
HELIX 106 33 131
COLOUR_TEXT_REGION 106 33 131 33 50