QUERY : ASSAVVFKQMVLQQALPMTLKGLDKASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQVEESRIQAGRLLERSIGGIALQQWGTTGGAASQLVLDASPELRREITDQLHQVMSEVALLRQAVESEVS : QUERY
UniRef90_X2LWJ1 : -----DVGAESKQPLLDIALKGLKRTPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQNLNKIPEAKQLNDYVTTLTNIQVGVARFSQWGTCGGEVERWVDKASTHELTQAVKKIHVIAKELKNVTAELE---- : UniRef90_X2LWJ1
UniRef90_V1HR49 : -----DVDAGMKQHLLDIALNGLKRIPQLEEVDGNSLRENFKKMASGSGTLRSLMTNLQNLNKIPEAKPLNDYAETLTNIQVGVARFSQWGTSGGEVEKWIGKASSQELTQAAKKIHIIVNELKNIRTELEN--- : UniRef90_V1HR49
UniRef90_V1EZY2 : ---------MVKKQLLDIALKGLDVIPELENIDGNRLRENFPEMASNNGSLRKLMTNLQNLNSVPEAKQLNGYAITLKNIQVGVAPFSQWGTNGGEVARWIDKASNQELTQAAKKIQAITQELKIIAAGLEN--- : UniRef90_V1EZY2
UniRef90_A9MF96 : -----DFGTGMTQLLLDIALNGVKRAPQLEKVDGNSLRKNFREMASGNGPLRTLMTNLQNLSLVPEVKQLNDYAINLKNIQVGTAPFSQWGTCGGEVARWIDKASDQELTLAAKKIQVIVEKLKYVATELEN--- : UniRef90_A9MF96
UniRef90_U1FQD8 : ATSPEDLQRLMKQAAFGSSLGGFAKADVLNNIAAEQLGKDHATLATGNGPLRSLCTALQAVVVGSEQPQLRELAAGLLARPIAGIPLQQWGTVGGKVTELLASATPELLQEAMSQLHTAMGEVADLQRAVKAEIA : UniRef90_U1FQD8
UniRef90_U1EHS5 : --SLADQKRLLLQKALPFTLGGLDKANELNNIDAQQLGQEHARLATGNGALRSLATSLNGIKDGSMRQESQTLAAGLLERSIAGIPLQQWGTVGGKVTELIANATPEQLQEAMSQLHAVMAEVADLQRAVKAEVA : UniRef90_U1EHS5
UniRef90_Q9I788 : -----EIKQMMLQKALPLTLGGLGKASELATLTAERLAKDHTRLASGDGALRSLATALVGIRDGSRIEASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSASPEQLREIAVQLHAVMDKVALLRHAVESEV- : UniRef90_Q9I788
UniRef90_A0FKE4 : --SMADQKRLFLQKALPYTLSALDKTSELKSINAEQLRKDHTTLATGNGALRSLVTALSGIRDGSKIEATTHQAARLLELNLGGIALQQWGTTGRQASEWVSSATQEQLGEVAAGLNDLMHEVAQLRYAVESEV- : UniRef90_A0FKE4
UniRef90_H7EBC6 : ----VDADALKTQMLLEIAVNGLKRIPQLEKVDGKSLRENFHAMSSGNGALRSLMTNLTNLKYIPEAKQLNDDAIKLKGIPVGVALFSQWGTNGGEVAKWIDKASDQELTLAAKSIQAIIKEVQKIANELSN--- : UniRef90_H7EBC6
UniRef90_S5NII6 : ----------VKQQLLTITINGLNKIPELENVDETSLRENFLDMASGNGPLRKLMTNLHNLNLIPEANRLNVYAIKLKNMQVGVAPFSQWGTNGGEVAKWINGASEQELGQAVNRIHAITNELKNIRNALG---- : UniRef90_S5NII6
UniRef90_X8LH96 : -NTIEALAKNLKQAALSSALTSLTRIEELQKLSGQELQTKYSKLSEGSGALRTLQTLLTNLSNLSGIPGMEEFQNTLKSVLVGNSPFSQWGTTGGSVEAWVNSASHNDLSLAAERIQGITKDVMALKEKL----- : UniRef90_X8LH96
UniRef90_J1EN75 : --------------ARDSAFLGLQRAIRSERFELDNFKSNFPYLTVANGSLRTIVTGLKGIVEFDDG-QMKDIAKEILDTQICGVPFSQFGTCSGSARDLVDNASYQQEKIIIKHLNELFEKVAL--HLVGAEV- : UniRef90_J1EN75
UniRef90_D6IDH0 : --SLSDKASEFTKISYDTSLNQLGLAQKVKMITGSELK-NIETLATGNGCLRSLMTAAHGVAQFSGNADITKAVETLLDIRVGNIPFSQFGTTEGSSVQWIQNASQDDLEKAAEVIRRVAGDLELLFQNIKN--- : UniRef90_D6IDH0
UniRef90_UPI0002BA76CE : ----------------DTSLKELDLARKAKEITGRELKNIET---TDKGCLRSLMMAAQRVAQFTDNPDITKAIQTLLNVHIGGIPFSQFGANAGRAVQWVKNASKKELNYAADMMRKIASDFEKLLQNIKS--- : UniRef90_UPI0002BA76CE
UniRef90_A9ZFJ9 : --------------------------QQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGE-LQAEASAILNTPVCGIPFSQWGTIGGAASAYV--ASGVDLTQAANEIKGLAQQMQKL--------- : UniRef90_A9ZFJ9
UniRef90_F9S7A1 : ------------QIGLNSAFMGIERALNCELFTAESLKIDFRGLATNNGSLRAMATGLQGLVQFGDCKTQR-LAEELLNKQIQSIPFSQFGTYSGVAAERIATA------------------------------- : UniRef90_F9S7A1
UniRef90_D0Z4Z3 : ----------MGKIALKESLKGLTQLDNLSSLDGESLKQQHRELATNNGALRSTVTALQAIRLFG-TETQKTTANSILSDMVGGRPFQQWATTGSDASTFLNEASSEE--------------------------- : UniRef90_D0Z4Z3
UniRef90_X4IPJ6 : -----DVGAESKQPLLDIALKGLKRTPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQNLNKIPEAKQLNDYVTTLTNIQV----------------------------------------------------- : UniRef90_X4IPJ6
UniRef90_U9PY21 : -----EIKQIMLQKALPLTLGGLGKASELATLTAERLAKDHTRLASGDGALRSLATALVGIRDGSRIEASRTQAARLLEQSVGGSR------------------------------------------------- : UniRef90_U9PY21
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-- :
OrigSeq : ASSAVVFKQMVLQQALPMTLKGLDKASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQVEESRIQAGRLLERSIGGIALQQWGTTGGAASQLVLDASPELRREITDQLHQVMSEVALLRQAVESEVS : OrigSeq
Jnet : ---HHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHH------HHHHHHHHHH---------------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---- : Jnet
jhmm : --HHHHHHHHHHHHHHHHHH-HHHHHHHHH-H-HHHHHHHHHHH------HHHHHHHHHHHH-------HHHHHHHHH----------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--- : jhmm
jpssm : ---HHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHH---------------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---- : jpssm
Lupas 14 : --------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : --------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : --------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ------B--BB---BB--BB--B-BB--B--B-B--B---B--BB---BBBB-BBBBB-BBB-B--B--B--BB--BB---BBBBBBBBBBBBBB-B--BB--B----B--BB--B--BB--B--B---B----- : Jnet_25
Jnet_5 : ------------------B---B--B--B-------B-------------B--BBBBB--B------------B--B----B----B---B-----B---B----------B---B--B---B--B--------- : Jnet_5
Jnet_0 : --------------------------------------------------B---------------------------------------B-----B--------------B---B------------------- : Jnet_0
Jnet Rel : 991799999999987543432189999986126688887445533787628999999999861688512999999874134224322111353289999861116689999999999999999999999741899 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.