SILENT_MODE
BLOCK_FILE jp_1uW0hGv.concise.blc
MAX_NSEQ 919
MAX_INPUT_LEN 921
OUTPUT_FILE jp_1uW0hGv.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 188 908   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 909 188 918 H SPACE
SUB_CHARS 1 909 188 918 E SPACE
SUB_CHARS 1 909 188 918 - SPACE
STRAND 3 912 9
COLOUR_TEXT_REGION 3 912 9 912 51
STRAND 39 912 42
COLOUR_TEXT_REGION 39 912 42 912 51
STRAND 71 912 75
COLOUR_TEXT_REGION 71 912 75 912 51
STRAND 99 912 108
COLOUR_TEXT_REGION 99 912 108 912 51
STRAND 128 912 134
COLOUR_TEXT_REGION 128 912 134 912 51
STRAND 137 912 137
COLOUR_TEXT_REGION 137 912 137 912 51
STRAND 152 912 155
COLOUR_TEXT_REGION 152 912 155 912 51
STRAND 185 912 187
COLOUR_TEXT_REGION 185 912 187 912 51
HELIX 23 912 34
COLOUR_TEXT_REGION 23 912 34 912 50
HELIX 58 912 65
COLOUR_TEXT_REGION 58 912 65 912 50
HELIX 78 912 89
COLOUR_TEXT_REGION 78 912 89 912 50
HELIX 159 912 170
COLOUR_TEXT_REGION 159 912 170 912 50
STRAND 2 917 8
COLOUR_TEXT_REGION 2 917 8 917 51
STRAND 39 917 42
COLOUR_TEXT_REGION 39 917 42 917 51
STRAND 71 917 76
COLOUR_TEXT_REGION 71 917 76 917 51
STRAND 99 917 108
COLOUR_TEXT_REGION 99 917 108 917 51
STRAND 116 917 117
COLOUR_TEXT_REGION 116 917 117 917 51
STRAND 128 917 133
COLOUR_TEXT_REGION 128 917 133 917 51
STRAND 152 917 155
COLOUR_TEXT_REGION 152 917 155 917 51
HELIX 23 917 34
COLOUR_TEXT_REGION 23 917 34 917 50
HELIX 58 917 65
COLOUR_TEXT_REGION 58 917 65 917 50
HELIX 78 917 88
COLOUR_TEXT_REGION 78 917 88 917 50
HELIX 160 917 170
COLOUR_TEXT_REGION 160 917 170 917 50
STRAND 3 918 10
COLOUR_TEXT_REGION 3 918 10 918 51
STRAND 39 918 42
COLOUR_TEXT_REGION 39 918 42 918 51
STRAND 70 918 75
COLOUR_TEXT_REGION 70 918 75 918 51
STRAND 99 918 102
COLOUR_TEXT_REGION 99 918 102 918 51
STRAND 104 918 109
COLOUR_TEXT_REGION 104 918 109 918 51
STRAND 129 918 137
COLOUR_TEXT_REGION 129 918 137 918 51
STRAND 152 918 155
COLOUR_TEXT_REGION 152 918 155 918 51
STRAND 184 918 187
COLOUR_TEXT_REGION 184 918 187 918 51
HELIX 23 918 35
COLOUR_TEXT_REGION 23 918 35 918 50
HELIX 58 918 66
COLOUR_TEXT_REGION 58 918 66 918 50
HELIX 78 918 90
COLOUR_TEXT_REGION 78 918 90 918 50
HELIX 158 918 170
COLOUR_TEXT_REGION 158 918 170 918 50