SILENT_MODE
BLOCK_FILE jp_knYk66J.concise.blc
MAX_NSEQ 962
MAX_INPUT_LEN 964
OUTPUT_FILE jp_knYk66J.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 76 951   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 952 76 961 H SPACE
SUB_CHARS 1 952 76 961 E SPACE
SUB_CHARS 1 952 76 961 - SPACE
HELIX 5 955 26
COLOUR_TEXT_REGION 5 955 26 955 50
HELIX 30 955 32
COLOUR_TEXT_REGION 30 955 32 955 50
HELIX 43 955 49
COLOUR_TEXT_REGION 43 955 49 955 50
HELIX 55 955 74
COLOUR_TEXT_REGION 55 955 74 955 50
STRAND 47 960 49
COLOUR_TEXT_REGION 47 960 49 960 51
HELIX 5 960 26
COLOUR_TEXT_REGION 5 960 26 960 50
HELIX 30 960 32
COLOUR_TEXT_REGION 30 960 32 960 50
HELIX 43 960 46
COLOUR_TEXT_REGION 43 960 46 960 50
HELIX 55 960 74
COLOUR_TEXT_REGION 55 960 74 960 50
HELIX 4 961 13
COLOUR_TEXT_REGION 4 961 13 961 50
HELIX 15 961 25
COLOUR_TEXT_REGION 15 961 25 961 50
HELIX 30 961 33
COLOUR_TEXT_REGION 30 961 33 961 50
HELIX 43 961 50
COLOUR_TEXT_REGION 43 961 50 961 50
HELIX 55 961 74
COLOUR_TEXT_REGION 55 961 74 961 50