SILENT_MODE
BLOCK_FILE jp_4ADkXeH.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_4ADkXeH.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 123 10   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 11 123 20 H SPACE
SUB_CHARS 1 11 123 20 E SPACE
SUB_CHARS 1 11 123 20 - SPACE
STRAND 21 14 25
COLOUR_TEXT_REGION 21 14 25 14 51
STRAND 37 14 42
COLOUR_TEXT_REGION 37 14 42 14 51
STRAND 86 14 90
COLOUR_TEXT_REGION 86 14 90 14 51
STRAND 95 14 102
COLOUR_TEXT_REGION 95 14 102 14 51
HELIX 3 14 15
COLOUR_TEXT_REGION 3 14 15 14 50
HELIX 48 14 65
COLOUR_TEXT_REGION 48 14 65 14 50
HELIX 68 14 76
COLOUR_TEXT_REGION 68 14 76 14 50
HELIX 78 14 80
COLOUR_TEXT_REGION 78 14 80 14 50
HELIX 108 14 119
COLOUR_TEXT_REGION 108 14 119 14 50
STRAND 22 19 25
COLOUR_TEXT_REGION 22 19 25 19 51
STRAND 37 19 42
COLOUR_TEXT_REGION 37 19 42 19 51
STRAND 65 19 65
COLOUR_TEXT_REGION 65 19 65 19 51
STRAND 87 19 90
COLOUR_TEXT_REGION 87 19 90 19 51
STRAND 95 19 101
COLOUR_TEXT_REGION 95 19 101 19 51
HELIX 3 19 15
COLOUR_TEXT_REGION 3 19 15 19 50
HELIX 48 19 64
COLOUR_TEXT_REGION 48 19 64 19 50
HELIX 68 19 75
COLOUR_TEXT_REGION 68 19 75 19 50
HELIX 78 19 81
COLOUR_TEXT_REGION 78 19 81 19 50
HELIX 108 19 119
COLOUR_TEXT_REGION 108 19 119 19 50
STRAND 21 20 26
COLOUR_TEXT_REGION 21 20 26 20 51
STRAND 37 20 41
COLOUR_TEXT_REGION 37 20 41 20 51
STRAND 86 20 90
COLOUR_TEXT_REGION 86 20 90 20 51
STRAND 95 20 103
COLOUR_TEXT_REGION 95 20 103 20 51
STRAND 106 20 107
COLOUR_TEXT_REGION 106 20 107 20 51
HELIX 3 20 15
COLOUR_TEXT_REGION 3 20 15 20 50
HELIX 48 20 65
COLOUR_TEXT_REGION 48 20 65 20 50
HELIX 68 20 79
COLOUR_TEXT_REGION 68 20 79 20 50
HELIX 108 20 118
COLOUR_TEXT_REGION 108 20 118 20 50