QUERY                  : LSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTIASGARESEKVFAQTVLSHVANVVLTQEDTAKLLQSTVKHNLNNYDLRSVGNGNSVLVSLRSDQMTLQDAKVLLEAALRQES : QUERY 
UniRef90_A8TCD3        : LSIQQLHTQVTHLAQ-ENGDATGKLRGAVAANTQGSFQGLTVSNGARETEKAFAMDILKHTSNIILNSYDQAELFSGSARLGKNNFVLEQVGGGQSRFVGLKSDQLTLRDAKILLEAAMRPP- : UniRef90_A8TCD3
UniRef90_Q27RI1        : LTIQTLHQQVSRLAEQQNGELIGKLRGNVAANREGSFQGLTVTNGARDTEKAFAQEVLRHVQDIALNQDDVAALHKSAIRFNHNNFELRSIGNSQSQLVGLRSDQLTLKDAKTLLDAAMRQQ- : UniRef90_Q27RI1
UniRef90_K5UZR0        : LSIQNLHSQVTLLAQQ-NAESTGKFRGNVAVNKEGSFQGLTIANGAKESEKSFANEVLKHALNITLNHDDQAELFKSVDRFNQNNFNLRVIGQGESRLVGLRSDQLTLKDAKILLDAVIRQQN : UniRef90_K5UZR0
UniRef90_E7BAU4        : MEINDLQSLISQIAEFGGGEKIGRLKSTL---QQVSTQAIT------SDERRFAYAVLEHAKNTILNRQDVAKLLPRA-----SNFELSQGKKGEVILKGLRVEQLSLEDAKLLLDAVTRK-- : UniRef90_E7BAU4
UniRef90_UPI0003108471 : MQIHALQSLVNQINQLGHADQAGRL-GN---------QGHTTGAGISSQERTFAQTVLEQVRNVSLNQQEVAGLLP-----HIANFKLQQEQGGNAVLAGLRSDQLSLADAKLLLDAAARQ-- : UniRef90_UPI0003108471
UniRef90_P69978        : MKINTLQSLINQITQVGHGGQAGRLTET-NPLTENSHQ-------ISTAEKAFANEVLEHVKNTALSRHDIACLLPR-----VSNLELKQGKAGEVIVTGLRTEQLSLSDAKLLLEAAMRQDT : UniRef90_P69978

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121 :
OrigSeq                : LSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTIASGARESEKVFAQTVLSHVANVVLTQEDTAKLLQSTVKHNLNNYDLRSVGNGNSVLVSLRSDQMTLQDAKVLLEAALRQES : OrigSeq

Jnet                   : --HHHHHHHHHHHHH-----EEEEE-----------EEEEEE-----HHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHH-----EEEEE----EEEEEEEE-----HHHHHHHHHHHH---- : Jnet
jhmm                   : --HHHHHHHHHHHHH------EEEE-----------EEEEEE-----HHHHHHHHHHHHHHHHHE--HHHHHHHH--HHHH-----EEEE----EEEEEEE------HHHHHHHHHHHH---- : jhmm
jpssm                  : --HHHHHHHHHHHHH-----EEEEEE----------EEEEE------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH------EEEEE----EEEEEEEEE--EEHHHHHHHHHHH----- : jpssm

Lupas 14               : --cccccccccccccc-------------------------------------------------------------------------------------------cccccccccccccc-- : Lupas 14
Lupas 21               : --------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28               : --------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : --B--B--BB--BB----B--BB-B---B-------BBBBBBB--B---B--BB--BB--B--BBB----BB-BB--BB-----BB-B-----B-BBBBBB---BBBB--B-BBB-BB-B--- : Jnet_25
Jnet_5                 : -----B---B--B-----------B---B---------B-----------------B---B----B----B--B-------------B---------B--B---------B--BB-------- : Jnet_5
Jnet_0                 : --------------------------------------B---------------------B-----------------------------------------------------B-------- : Jnet_0
Jnet Rel               : 975899999999874478740656410235666632588862677602789999999999888621558999874111021787418886488707998861234311578999887517999 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.