SILENT_MODE BLOCK_FILE jp_NG_oDRc.concise.blc MAX_NSEQ 1001 MAX_INPUT_LEN 1003 OUTPUT_FILE jp_NG_oDRc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 152 990 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 991 152 1000 H SPACE SUB_CHARS 1 991 152 1000 E SPACE SUB_CHARS 1 991 152 1000 - SPACE HELIX 4 994 10 COLOUR_TEXT_REGION 4 994 10 994 50 HELIX 17 994 41 COLOUR_TEXT_REGION 17 994 41 994 50 HELIX 43 994 57 COLOUR_TEXT_REGION 43 994 57 994 50 HELIX 60 994 76 COLOUR_TEXT_REGION 60 994 76 994 50 HELIX 82 994 101 COLOUR_TEXT_REGION 82 994 101 994 50 HELIX 108 994 124 COLOUR_TEXT_REGION 108 994 124 994 50 HELIX 127 994 149 COLOUR_TEXT_REGION 127 994 149 994 50 HELIX 4 999 10 COLOUR_TEXT_REGION 4 999 10 999 50 HELIX 17 999 41 COLOUR_TEXT_REGION 17 999 41 999 50 HELIX 43 999 57 COLOUR_TEXT_REGION 43 999 57 999 50 HELIX 60 999 77 COLOUR_TEXT_REGION 60 999 77 999 50 HELIX 81 999 101 COLOUR_TEXT_REGION 81 999 101 999 50 HELIX 108 999 124 COLOUR_TEXT_REGION 108 999 124 999 50 HELIX 127 999 150 COLOUR_TEXT_REGION 127 999 150 999 50 HELIX 4 1000 10 COLOUR_TEXT_REGION 4 1000 10 1000 50 HELIX 16 1000 40 COLOUR_TEXT_REGION 16 1000 40 1000 50 HELIX 43 1000 57 COLOUR_TEXT_REGION 43 1000 57 1000 50 HELIX 60 1000 76 COLOUR_TEXT_REGION 60 1000 76 1000 50 HELIX 83 1000 102 COLOUR_TEXT_REGION 83 1000 102 1000 50 HELIX 106 1000 124 COLOUR_TEXT_REGION 106 1000 124 1000 50 HELIX 127 1000 149 COLOUR_TEXT_REGION 127 1000 149 1000 50