SILENT_MODE
BLOCK_FILE jp_qHU5omD.concise.blc
MAX_NSEQ 803
MAX_INPUT_LEN 805
OUTPUT_FILE jp_qHU5omD.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 118 792   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 793 118 802 H SPACE
SUB_CHARS 1 793 118 802 E SPACE
SUB_CHARS 1 793 118 802 - SPACE
STRAND 19 796 24
COLOUR_TEXT_REGION 19 796 24 796 51
STRAND 31 796 36
COLOUR_TEXT_REGION 31 796 36 796 51
STRAND 114 796 114
COLOUR_TEXT_REGION 114 796 114 796 51
HELIX 43 796 49
COLOUR_TEXT_REGION 43 796 49 796 50
HELIX 59 796 62
COLOUR_TEXT_REGION 59 796 62 796 50
HELIX 68 796 71
COLOUR_TEXT_REGION 68 796 71 796 50
HELIX 75 796 89
COLOUR_TEXT_REGION 75 796 89 796 50
HELIX 100 796 110
COLOUR_TEXT_REGION 100 796 110 796 50
STRAND 19 801 24
COLOUR_TEXT_REGION 19 801 24 801 51
STRAND 31 801 36
COLOUR_TEXT_REGION 31 801 36 801 51
STRAND 114 801 115
COLOUR_TEXT_REGION 114 801 115 801 51
HELIX 39 801 49
COLOUR_TEXT_REGION 39 801 49 801 50
HELIX 59 801 62
COLOUR_TEXT_REGION 59 801 62 801 50
HELIX 69 801 71
COLOUR_TEXT_REGION 69 801 71 801 50
HELIX 75 801 89
COLOUR_TEXT_REGION 75 801 89 801 50
HELIX 100 801 110
COLOUR_TEXT_REGION 100 801 110 801 50
STRAND 19 802 24
COLOUR_TEXT_REGION 19 802 24 802 51
STRAND 30 802 36
COLOUR_TEXT_REGION 30 802 36 802 51
HELIX 43 802 49
COLOUR_TEXT_REGION 43 802 49 802 50
HELIX 57 802 62
COLOUR_TEXT_REGION 57 802 62 802 50
HELIX 67 802 72
COLOUR_TEXT_REGION 67 802 72 802 50
HELIX 75 802 89
COLOUR_TEXT_REGION 75 802 89 802 50
HELIX 100 802 108
COLOUR_TEXT_REGION 100 802 108 802 50
HELIX 110 802 114
COLOUR_TEXT_REGION 110 802 114 802 50