SILENT_MODE
BLOCK_FILE jp_b1xbBGs.concise.blc
MAX_NSEQ 272
MAX_INPUT_LEN 274
OUTPUT_FILE jp_b1xbBGs.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 96 261   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 262 96 271 H SPACE
SUB_CHARS 1 262 96 271 E SPACE
SUB_CHARS 1 262 96 271 - SPACE
STRAND 3 265 6
COLOUR_TEXT_REGION 3 265 6 265 51
STRAND 56 265 60
COLOUR_TEXT_REGION 56 265 60 265 51
STRAND 63 265 63
COLOUR_TEXT_REGION 63 265 63 265 51
STRAND 92 265 94
COLOUR_TEXT_REGION 92 265 94 265 51
HELIX 12 265 21
COLOUR_TEXT_REGION 12 265 21 265 50
HELIX 36 265 46
COLOUR_TEXT_REGION 36 265 46 265 50
HELIX 67 265 74
COLOUR_TEXT_REGION 67 265 74 265 50
HELIX 80 265 85
COLOUR_TEXT_REGION 80 265 85 265 50
STRAND 3 270 5
COLOUR_TEXT_REGION 3 270 5 270 51
STRAND 56 270 59
COLOUR_TEXT_REGION 56 270 59 270 51
STRAND 92 270 94
COLOUR_TEXT_REGION 92 270 94 270 51
HELIX 12 270 21
COLOUR_TEXT_REGION 12 270 21 270 50
HELIX 36 270 45
COLOUR_TEXT_REGION 36 270 45 270 50
HELIX 65 270 74
COLOUR_TEXT_REGION 65 270 74 270 50
HELIX 81 270 85
COLOUR_TEXT_REGION 81 270 85 270 50
STRAND 3 271 8
COLOUR_TEXT_REGION 3 271 8 271 51
STRAND 57 271 63
COLOUR_TEXT_REGION 57 271 63 271 51
STRAND 93 271 94
COLOUR_TEXT_REGION 93 271 94 271 51
HELIX 12 271 22
COLOUR_TEXT_REGION 12 271 22 271 50
HELIX 36 271 46
COLOUR_TEXT_REGION 36 271 46 271 50
HELIX 67 271 74
COLOUR_TEXT_REGION 67 271 74 271 50
HELIX 78 271 85
COLOUR_TEXT_REGION 78 271 85 271 50