SILENT_MODE
BLOCK_FILE jp_gBdSqYN.concise.blc
MAX_NSEQ 673
MAX_INPUT_LEN 675
OUTPUT_FILE jp_gBdSqYN.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 110 662   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 663 110 672 H SPACE
SUB_CHARS 1 663 110 672 E SPACE
SUB_CHARS 1 663 110 672 - SPACE
STRAND 3 666 7
COLOUR_TEXT_REGION 3 666 7 666 51
STRAND 69 666 76
COLOUR_TEXT_REGION 69 666 76 666 51
STRAND 81 666 83
COLOUR_TEXT_REGION 81 666 83 666 51
STRAND 93 666 93
COLOUR_TEXT_REGION 93 666 93 666 51
STRAND 98 666 106
COLOUR_TEXT_REGION 98 666 106 666 51
HELIX 14 666 24
COLOUR_TEXT_REGION 14 666 24 666 50
HELIX 29 666 38
COLOUR_TEXT_REGION 29 666 38 666 50
HELIX 44 666 61
COLOUR_TEXT_REGION 44 666 61 666 50
STRAND 3 671 7
COLOUR_TEXT_REGION 3 671 7 671 51
STRAND 69 671 76
COLOUR_TEXT_REGION 69 671 76 671 51
STRAND 81 671 83
COLOUR_TEXT_REGION 81 671 83 671 51
STRAND 93 671 94
COLOUR_TEXT_REGION 93 671 94 671 51
STRAND 98 671 106
COLOUR_TEXT_REGION 98 671 106 671 51
HELIX 14 671 24
COLOUR_TEXT_REGION 14 671 24 671 50
HELIX 29 671 38
COLOUR_TEXT_REGION 29 671 38 671 50
HELIX 44 671 60
COLOUR_TEXT_REGION 44 671 60 671 50
STRAND 3 672 7
COLOUR_TEXT_REGION 3 672 7 672 51
STRAND 70 672 76
COLOUR_TEXT_REGION 70 672 76 672 51
STRAND 81 672 83
COLOUR_TEXT_REGION 81 672 83 672 51
STRAND 98 672 106
COLOUR_TEXT_REGION 98 672 106 672 51
HELIX 14 672 24
COLOUR_TEXT_REGION 14 672 24 672 50
HELIX 29 672 38
COLOUR_TEXT_REGION 29 672 38 672 50
HELIX 45 672 62
COLOUR_TEXT_REGION 45 672 62 672 50