SILENT_MODE BLOCK_FILE jp_2jpa5_g.concise.blc MAX_NSEQ 570 MAX_INPUT_LEN 572 OUTPUT_FILE jp_2jpa5_g.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 113 559 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 560 113 569 H SPACE SUB_CHARS 1 560 113 569 E SPACE SUB_CHARS 1 560 113 569 - SPACE STRAND 9 563 14 COLOUR_TEXT_REGION 9 563 14 563 51 STRAND 20 563 25 COLOUR_TEXT_REGION 20 563 25 563 51 STRAND 36 563 42 COLOUR_TEXT_REGION 36 563 42 563 51 STRAND 47 563 52 COLOUR_TEXT_REGION 47 563 52 563 51 STRAND 57 563 58 COLOUR_TEXT_REGION 57 563 58 563 51 STRAND 63 563 68 COLOUR_TEXT_REGION 63 563 68 563 51 STRAND 81 563 83 COLOUR_TEXT_REGION 81 563 83 563 51 STRAND 95 563 100 COLOUR_TEXT_REGION 95 563 100 563 51 STRAND 106 563 112 COLOUR_TEXT_REGION 106 563 112 563 51 STRAND 9 568 14 COLOUR_TEXT_REGION 9 568 14 568 51 STRAND 20 568 25 COLOUR_TEXT_REGION 20 568 25 568 51 STRAND 36 568 42 COLOUR_TEXT_REGION 36 568 42 568 51 STRAND 47 568 52 COLOUR_TEXT_REGION 47 568 52 568 51 STRAND 57 568 58 COLOUR_TEXT_REGION 57 568 58 568 51 STRAND 63 568 68 COLOUR_TEXT_REGION 63 568 68 568 51 STRAND 81 568 83 COLOUR_TEXT_REGION 81 568 83 568 51 STRAND 96 568 100 COLOUR_TEXT_REGION 96 568 100 568 51 STRAND 106 568 111 COLOUR_TEXT_REGION 106 568 111 568 51 STRAND 9 569 14 COLOUR_TEXT_REGION 9 569 14 569 51 STRAND 20 569 25 COLOUR_TEXT_REGION 20 569 25 569 51 STRAND 36 569 42 COLOUR_TEXT_REGION 36 569 42 569 51 STRAND 47 569 52 COLOUR_TEXT_REGION 47 569 52 569 51 STRAND 57 569 58 COLOUR_TEXT_REGION 57 569 58 569 51 STRAND 63 569 68 COLOUR_TEXT_REGION 63 569 68 569 51 STRAND 82 569 83 COLOUR_TEXT_REGION 82 569 83 569 51 STRAND 95 569 100 COLOUR_TEXT_REGION 95 569 100 569 51 STRAND 106 569 112 COLOUR_TEXT_REGION 106 569 112 569 51