SILENT_MODE
BLOCK_FILE jp_03EfdVw.concise.blc
MAX_NSEQ 820
MAX_INPUT_LEN 822
OUTPUT_FILE jp_03EfdVw.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 122 809   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 810 122 819 H SPACE
SUB_CHARS 1 810 122 819 E SPACE
SUB_CHARS 1 810 122 819 - SPACE
STRAND 4 813 8
COLOUR_TEXT_REGION 4 813 8 813 51
STRAND 20 813 21
COLOUR_TEXT_REGION 20 813 21 813 51
STRAND 117 813 118
COLOUR_TEXT_REGION 117 813 118 813 51
HELIX 31 813 43
COLOUR_TEXT_REGION 31 813 43 813 50
HELIX 51 813 62
COLOUR_TEXT_REGION 51 813 62 813 50
HELIX 77 813 85
COLOUR_TEXT_REGION 77 813 85 813 50
HELIX 87 813 93
COLOUR_TEXT_REGION 87 813 93 813 50
STRAND 4 818 7
COLOUR_TEXT_REGION 4 818 7 818 51
STRAND 20 818 21
COLOUR_TEXT_REGION 20 818 21 818 51
STRAND 116 818 116
COLOUR_TEXT_REGION 116 818 116 818 51
HELIX 31 818 44
COLOUR_TEXT_REGION 31 818 44 818 50
HELIX 51 818 62
COLOUR_TEXT_REGION 51 818 62 818 50
HELIX 77 818 93
COLOUR_TEXT_REGION 77 818 93 818 50
STRAND 5 819 10
COLOUR_TEXT_REGION 5 819 10 819 51
STRAND 20 819 20
COLOUR_TEXT_REGION 20 819 20 819 51
STRAND 72 819 73
COLOUR_TEXT_REGION 72 819 73 819 51
STRAND 117 819 118
COLOUR_TEXT_REGION 117 819 118 819 51
HELIX 31 819 37
COLOUR_TEXT_REGION 31 819 37 819 50
HELIX 52 819 63
COLOUR_TEXT_REGION 52 819 63 819 50
HELIX 77 819 82
COLOUR_TEXT_REGION 77 819 82 819 50
HELIX 88 819 93
COLOUR_TEXT_REGION 88 819 93 819 50