SILENT_MODE
BLOCK_FILE jp_R0TH6vx.concise.blc
MAX_NSEQ 58
MAX_INPUT_LEN 60
OUTPUT_FILE jp_R0TH6vx.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 113 47   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 48 113 57 H SPACE
SUB_CHARS 1 48 113 57 E SPACE
SUB_CHARS 1 48 113 57 - SPACE
STRAND 4 51 10
COLOUR_TEXT_REGION 4 51 10 51 51
STRAND 17 51 25
COLOUR_TEXT_REGION 17 51 25 51 51
STRAND 32 51 37
COLOUR_TEXT_REGION 32 51 37 51 51
STRAND 42 51 47
COLOUR_TEXT_REGION 42 51 47 51 51
STRAND 80 51 85
COLOUR_TEXT_REGION 80 51 85 51 51
STRAND 89 51 96
COLOUR_TEXT_REGION 89 51 96 51 51
STRAND 101 51 108
COLOUR_TEXT_REGION 101 51 108 51 51
HELIX 49 51 59
COLOUR_TEXT_REGION 49 51 59 51 50
HELIX 64 51 74
COLOUR_TEXT_REGION 64 51 74 51 50
STRAND 5 56 10
COLOUR_TEXT_REGION 5 56 10 56 51
STRAND 17 56 25
COLOUR_TEXT_REGION 17 56 25 56 51
STRAND 31 56 37
COLOUR_TEXT_REGION 31 56 37 56 51
STRAND 42 56 47
COLOUR_TEXT_REGION 42 56 47 56 51
STRAND 80 56 85
COLOUR_TEXT_REGION 80 56 85 56 51
STRAND 89 56 96
COLOUR_TEXT_REGION 89 56 96 56 51
STRAND 101 56 108
COLOUR_TEXT_REGION 101 56 108 56 51
HELIX 49 56 58
COLOUR_TEXT_REGION 49 56 58 56 50
HELIX 63 56 74
COLOUR_TEXT_REGION 63 56 74 56 50
STRAND 4 57 10
COLOUR_TEXT_REGION 4 57 10 57 51
STRAND 17 57 25
COLOUR_TEXT_REGION 17 57 25 57 51
STRAND 32 57 37
COLOUR_TEXT_REGION 32 57 37 57 51
STRAND 43 57 46
COLOUR_TEXT_REGION 43 57 46 57 51
STRAND 80 57 84
COLOUR_TEXT_REGION 80 57 84 57 51
STRAND 90 57 97
COLOUR_TEXT_REGION 90 57 97 57 51
STRAND 101 57 108
COLOUR_TEXT_REGION 101 57 108 57 51
HELIX 49 57 60
COLOUR_TEXT_REGION 49 57 60 57 50
HELIX 64 57 73
COLOUR_TEXT_REGION 64 57 73 57 50