Filename Description -------- ----------- jp_9zeiGyO.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_9zeiGyO.als Alscript command file. Used to generate PS/PDF outputjp_9zeiGyO.blast.gz PSIBLAST output (compressed) jp_9zeiGyO.coils.csv The output from coils in CSV format jp_9zeiGyO.coilseq.lupas_14 The output from coils using a window length of 14 jp_9zeiGyO.coilseq.lupas_21 The output from coils using a window length of 21 jp_9zeiGyO.coilseq.lupas_28 The output from coils using a window length of 28 jp_9zeiGyO.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_9zeiGyO.concise.blc A BLC file of the prediction and alignment jp_9zeiGyO.concise.pdf A PDF file of the prediction and alignment jp_9zeiGyO.fasta Input query sequence in FASTA format jp_9zeiGyO.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_9zeiGyO.hmm The HHMer2 profile of the alignment jp_9zeiGyO.html A HTML file of the prediction and alignment jp_9zeiGyO.input Your raw input jp_9zeiGyO.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_9zeiGyO.jnet The output from Jnet jp_9zeiGyO.profile PSIBLAST profile jp_9zeiGyO.pssm PSIBLAST PSSM in a format for Jnet jp_9zeiGyO.seq Your sequence jp_9zeiGyO.simple.html The brief HTML output of the query sequence and prediction only jp_9zeiGyO.svg.html A Jalview generated SVG file with summary of the results.