SILENT_MODE
BLOCK_FILE jp_9zeiGyO.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_9zeiGyO.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 143 8   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 9 143 18 H SPACE
SUB_CHARS 1 9 143 18 E SPACE
SUB_CHARS 1 9 143 18 - SPACE
STRAND 116 12 120
COLOUR_TEXT_REGION 116 12 120 12 51
HELIX 4 12 14
COLOUR_TEXT_REGION 4 12 14 12 50
HELIX 18 12 23
COLOUR_TEXT_REGION 18 12 23 12 50
HELIX 38 12 51
COLOUR_TEXT_REGION 38 12 51 12 50
HELIX 57 12 65
COLOUR_TEXT_REGION 57 12 65 12 50
HELIX 72 12 79
COLOUR_TEXT_REGION 72 12 79 12 50
HELIX 82 12 101
COLOUR_TEXT_REGION 82 12 101 12 50
HELIX 108 12 109
COLOUR_TEXT_REGION 108 12 109 12 50
HELIX 137 12 139
COLOUR_TEXT_REGION 137 12 139 12 50
STRAND 116 17 119
COLOUR_TEXT_REGION 116 17 119 17 51
HELIX 4 17 14
COLOUR_TEXT_REGION 4 17 14 17 50
HELIX 18 17 22
COLOUR_TEXT_REGION 18 17 22 17 50
HELIX 40 17 52
COLOUR_TEXT_REGION 40 17 52 17 50
HELIX 57 17 65
COLOUR_TEXT_REGION 57 17 65 17 50
HELIX 72 17 79
COLOUR_TEXT_REGION 72 17 79 17 50
HELIX 82 17 99
COLOUR_TEXT_REGION 82 17 99 17 50
HELIX 108 17 109
COLOUR_TEXT_REGION 108 17 109 17 50
HELIX 137 17 140
COLOUR_TEXT_REGION 137 17 140 17 50
STRAND 116 18 120
COLOUR_TEXT_REGION 116 18 120 18 51
HELIX 5 18 14
COLOUR_TEXT_REGION 5 18 14 18 50
HELIX 17 18 24
COLOUR_TEXT_REGION 17 18 24 18 50
HELIX 32 18 50
COLOUR_TEXT_REGION 32 18 50 18 50
HELIX 56 18 65
COLOUR_TEXT_REGION 56 18 65 18 50
HELIX 72 18 79
COLOUR_TEXT_REGION 72 18 79 18 50
HELIX 82 18 102
COLOUR_TEXT_REGION 82 18 102 18 50
HELIX 108 18 110
COLOUR_TEXT_REGION 108 18 110 18 50
HELIX 112 18 112
COLOUR_TEXT_REGION 112 18 112 18 50