QUERY           : EGGSLAALTAHQACHLPLETFTRHRQPRGAEQLEQCGYPVQRLVALYLAARLSWNQVDQVIRNALASPGSGGDLGEAIREQPEQARLALTLAAAESERFVRQGTGNDEAGAANADVVSLTCPVAAGECAGPADSGDALLERNY : QUERY 
UniRef90_X4V5K1 : KGDGLAALTTHQVCAIPLESLARSRQPRGWEELSQCGYPVHNLVTLYLLTRLPWSQLDTVITQALATPEDGGQLAQAIRENPAQARLALSMAAAQSDAFSHQQAGNSQEQAASADVVNLTCPAADLNCLAPADSADALQERDY : UniRef90_X4V5K1
UniRef90_F9AHG8 : KKNAMEALAAHRVCGVPLETLARSRKPRDLPDDLSCAYNAQQIVSLFLATRILFTHIDSIFTLNLQEPEVAEDLRRINENNPGMVIQVLTVARQIYNDYVTHHPGQTSAGAQAADILSLFCPDADKSCVASSDQANINIE--- : UniRef90_F9AHG8
UniRef90_V4ULG7 : EGGSLAALTAHQACHLPLETFTRHRQPRGWEQLEQCGYPVQRLVALYLAARLSWNQVDQVIRNALASPGSGGDLGEAIREQPERARLALTLAAAESERFVRQG---------------------------------------- : UniRef90_V4ULG7
UniRef90_T0PG59 : ------------------------------------------------LTRLPWSQLDSVIAQALSTPEEGGQLAQAIRENPAQARLALTMAAAQSDAFTRQHADNTQEQAASADVVNLTCPAADLNCLSPADSANALQERDY : UniRef90_T0PG59

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141 :
OrigSeq         : EGGSLAALTAHQACHLPLETFTRHRQPRGAEQLEQCGYPVQRLVALYLAARLSWNQVDQVIRNALASPGSGGDLGEAIREQPEQARLALTLAAAESERFVRQGTGNDEAGAANADVVSLTCPVAAGECAGPADSGDALLERNY : OrigSeq

Jnet            : ---HHHHHHHHHHH---HHHHHH--------------HHHHHHHHHHHHHH-----HHHHHHHHH------HHHHHHHH--HHHHHHHHHHHHHHHHHHHH------HH------EEEEE----------------HHH---- : Jnet
jhmm            : ---HHHHHHHHHHH---HHHHH-----------------HHHHHHHHHHHHH----HHHHHHHHH------HHHHHHHH--HHHHHHHHHHHHHHHHHH--------HH------EEEE-----------------HHHH--- : jhmm
jpssm           : ----HHHHHHHHHH--HHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-----HHH-H---EEEEE----------------------- : jpssm

Lupas 14        : ----------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---BB-BBBBB-BB-BBB--BB----B--B--B--BBB-B--BBBBBBBBBBBB--BB-BB--BB--------BB-BB---B--BBBBBBBBB--B--BB----------B--BBBBBBBBB-B---BBB-B--B-B------ : Jnet_25
Jnet_5          : -------B----BB-B-B---------------------B--BB-BBBB-------B--BB------------B----------B--BB-BB-----------------------BB-B-B------B--------------- : Jnet_5
Jnet_0          : ---------------------------------------------B--------------------------------------------------------------------------B---------------------- : Jnet_0
Jnet Rel        : 99801558888664352899983026887631111321399999999874217322899999862588874468988743707899999999999999841368875020020130467236777654677777540111699 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.