SILENT_MODE BLOCK_FILE jp_oLnNEG8.concise.blc MAX_NSEQ 69 MAX_INPUT_LEN 71 OUTPUT_FILE jp_oLnNEG8.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 395 58 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 59 395 68 H SPACE SUB_CHARS 1 59 395 68 E SPACE SUB_CHARS 1 59 395 68 - SPACE STRAND 80 62 80 COLOUR_TEXT_REGION 80 62 80 62 51 STRAND 89 62 94 COLOUR_TEXT_REGION 89 62 94 62 51 STRAND 100 62 103 COLOUR_TEXT_REGION 100 62 103 62 51 STRAND 147 62 151 COLOUR_TEXT_REGION 147 62 151 62 51 STRAND 175 62 175 COLOUR_TEXT_REGION 175 62 175 62 51 STRAND 180 62 181 COLOUR_TEXT_REGION 180 62 181 62 51 STRAND 186 62 187 COLOUR_TEXT_REGION 186 62 187 62 51 STRAND 255 62 256 COLOUR_TEXT_REGION 255 62 256 62 51 STRAND 277 62 279 COLOUR_TEXT_REGION 277 62 279 62 51 STRAND 305 62 306 COLOUR_TEXT_REGION 305 62 306 62 51 HELIX 4 62 43 COLOUR_TEXT_REGION 4 62 43 62 50 HELIX 50 62 72 COLOUR_TEXT_REGION 50 62 72 62 50 HELIX 348 62 393 COLOUR_TEXT_REGION 348 62 393 62 50 STRAND 79 67 80 COLOUR_TEXT_REGION 79 67 80 67 51 STRAND 90 67 94 COLOUR_TEXT_REGION 90 67 94 67 51 STRAND 99 67 103 COLOUR_TEXT_REGION 99 67 103 67 51 STRAND 118 67 120 COLOUR_TEXT_REGION 118 67 120 67 51 STRAND 147 67 152 COLOUR_TEXT_REGION 147 67 152 67 51 STRAND 173 67 175 COLOUR_TEXT_REGION 173 67 175 67 51 STRAND 180 67 182 COLOUR_TEXT_REGION 180 67 182 67 51 STRAND 185 67 187 COLOUR_TEXT_REGION 185 67 187 67 51 STRAND 195 67 195 COLOUR_TEXT_REGION 195 67 195 67 51 STRAND 255 67 257 COLOUR_TEXT_REGION 255 67 257 67 51 STRAND 264 67 265 COLOUR_TEXT_REGION 264 67 265 67 51 STRAND 275 67 279 COLOUR_TEXT_REGION 275 67 279 67 51 STRAND 304 67 307 COLOUR_TEXT_REGION 304 67 307 67 51 STRAND 311 67 312 COLOUR_TEXT_REGION 311 67 312 67 51 STRAND 323 67 323 COLOUR_TEXT_REGION 323 67 323 67 51 STRAND 342 67 343 COLOUR_TEXT_REGION 342 67 343 67 51 HELIX 4 67 13 COLOUR_TEXT_REGION 4 67 13 67 50 HELIX 15 67 43 COLOUR_TEXT_REGION 15 67 43 67 50 HELIX 50 67 70 COLOUR_TEXT_REGION 50 67 70 67 50 HELIX 349 67 368 COLOUR_TEXT_REGION 349 67 368 67 50 HELIX 371 67 393 COLOUR_TEXT_REGION 371 67 393 67 50 STRAND 89 68 93 COLOUR_TEXT_REGION 89 68 93 68 51 STRAND 147 68 150 COLOUR_TEXT_REGION 147 68 150 68 51 STRAND 177 68 180 COLOUR_TEXT_REGION 177 68 180 68 51 HELIX 4 68 23 COLOUR_TEXT_REGION 4 68 23 68 50 HELIX 25 68 43 COLOUR_TEXT_REGION 25 68 43 68 50 HELIX 49 68 75 COLOUR_TEXT_REGION 49 68 75 68 50 HELIX 164 68 167 COLOUR_TEXT_REGION 164 68 167 68 50 HELIX 176 68 176 COLOUR_TEXT_REGION 176 68 176 68 50 HELIX 187 68 190 COLOUR_TEXT_REGION 187 68 190 68 50 HELIX 276 68 278 COLOUR_TEXT_REGION 276 68 278 68 50 HELIX 329 68 329 COLOUR_TEXT_REGION 329 68 329 68 50 HELIX 348 68 393 COLOUR_TEXT_REGION 348 68 393 68 50