SILENT_MODE BLOCK_FILE jp_w9n1Tyb.concise.blc MAX_NSEQ 728 MAX_INPUT_LEN 730 OUTPUT_FILE jp_w9n1Tyb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 179 717 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 718 179 727 H SPACE SUB_CHARS 1 718 179 727 E SPACE SUB_CHARS 1 718 179 727 - SPACE STRAND 30 721 38 COLOUR_TEXT_REGION 30 721 38 721 51 STRAND 65 721 70 COLOUR_TEXT_REGION 65 721 70 721 51 STRAND 84 721 91 COLOUR_TEXT_REGION 84 721 91 721 51 STRAND 125 721 129 COLOUR_TEXT_REGION 125 721 129 721 51 STRAND 152 721 159 COLOUR_TEXT_REGION 152 721 159 721 51 HELIX 3 721 18 COLOUR_TEXT_REGION 3 721 18 721 50 HELIX 50 721 61 COLOUR_TEXT_REGION 50 721 61 721 50 HELIX 95 721 108 COLOUR_TEXT_REGION 95 721 108 721 50 HELIX 163 721 172 COLOUR_TEXT_REGION 163 721 172 721 50 STRAND 30 726 38 COLOUR_TEXT_REGION 30 726 38 726 51 STRAND 65 726 70 COLOUR_TEXT_REGION 65 726 70 726 51 STRAND 84 726 91 COLOUR_TEXT_REGION 84 726 91 726 51 STRAND 126 726 129 COLOUR_TEXT_REGION 126 726 129 726 51 STRAND 152 726 159 COLOUR_TEXT_REGION 152 726 159 726 51 HELIX 3 726 18 COLOUR_TEXT_REGION 3 726 18 726 50 HELIX 50 726 61 COLOUR_TEXT_REGION 50 726 61 726 50 HELIX 95 726 107 COLOUR_TEXT_REGION 95 726 107 726 50 HELIX 163 726 172 COLOUR_TEXT_REGION 163 726 172 726 50 STRAND 31 727 37 COLOUR_TEXT_REGION 31 727 37 727 51 STRAND 66 727 69 COLOUR_TEXT_REGION 66 727 69 727 51 STRAND 85 727 91 COLOUR_TEXT_REGION 85 727 91 727 51 STRAND 125 727 129 COLOUR_TEXT_REGION 125 727 129 727 51 STRAND 151 727 158 COLOUR_TEXT_REGION 151 727 158 727 51 HELIX 3 727 18 COLOUR_TEXT_REGION 3 727 18 727 50 HELIX 50 727 61 COLOUR_TEXT_REGION 50 727 61 727 50 HELIX 96 727 108 COLOUR_TEXT_REGION 96 727 108 727 50 HELIX 163 727 172 COLOUR_TEXT_REGION 163 727 172 727 50