SILENT_MODE
BLOCK_FILE jp_3rXbDmA.concise.blc
MAX_NSEQ 1042
MAX_INPUT_LEN 1044
OUTPUT_FILE jp_3rXbDmA.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 81 1031   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1032 81 1041 H SPACE
SUB_CHARS 1 1032 81 1041 E SPACE
SUB_CHARS 1 1032 81 1041 - SPACE
STRAND 3 1035 7
COLOUR_TEXT_REGION 3 1035 7 1035 51
STRAND 26 1035 26
COLOUR_TEXT_REGION 26 1035 26 1035 51
STRAND 32 1035 37
COLOUR_TEXT_REGION 32 1035 37 1035 51
STRAND 66 1035 70
COLOUR_TEXT_REGION 66 1035 70 1035 51
HELIX 13 1035 25
COLOUR_TEXT_REGION 13 1035 25 1035 50
HELIX 49 1035 59
COLOUR_TEXT_REGION 49 1035 59 1035 50
STRAND 3 1040 6
COLOUR_TEXT_REGION 3 1040 6 1040 51
STRAND 32 1040 37
COLOUR_TEXT_REGION 32 1040 37 1040 51
STRAND 66 1040 70
COLOUR_TEXT_REGION 66 1040 70 1040 51
HELIX 14 1040 25
COLOUR_TEXT_REGION 14 1040 25 1040 50
HELIX 48 1040 59
COLOUR_TEXT_REGION 48 1040 59 1040 50
STRAND 3 1041 7
COLOUR_TEXT_REGION 3 1041 7 1041 51
STRAND 25 1041 27
COLOUR_TEXT_REGION 25 1041 27 1041 51
STRAND 32 1041 37
COLOUR_TEXT_REGION 32 1041 37 1041 51
STRAND 65 1041 70
COLOUR_TEXT_REGION 65 1041 70 1041 51
HELIX 12 1041 20
COLOUR_TEXT_REGION 12 1041 20 1041 50
HELIX 49 1041 59
COLOUR_TEXT_REGION 49 1041 59 1041 50