SILENT_MODE
BLOCK_FILE jp_CPbC0BN.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_CPbC0BN.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 48 7   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 8 48 17 H SPACE
SUB_CHARS 1 8 48 17 E SPACE
SUB_CHARS 1 8 48 17 - SPACE
STRAND 6 11 9
COLOUR_TEXT_REGION 6 11 9 11 51
STRAND 14 11 18
COLOUR_TEXT_REGION 14 11 18 11 51
HELIX 19 11 20
COLOUR_TEXT_REGION 19 11 20 11 50
HELIX 28 11 43
COLOUR_TEXT_REGION 28 11 43 11 50
STRAND 6 16 9
COLOUR_TEXT_REGION 6 16 9 16 51
STRAND 14 16 17
COLOUR_TEXT_REGION 14 16 17 16 51
HELIX 18 16 21
COLOUR_TEXT_REGION 18 16 21 16 50
HELIX 28 16 44
COLOUR_TEXT_REGION 28 16 44 16 50
STRAND 6 17 20
COLOUR_TEXT_REGION 6 17 20 17 51
HELIX 28 17 43
COLOUR_TEXT_REGION 28 17 43 17 50