QUERY           : IMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL : QUERY 
UniRef90_F0VYH7 : IMGDKTVRVRADLHHIIKIETAKNGGNVKEVMEIRLRRVL-------- : UniRef90_F0VYH7
UniRef90_I3GYR4 : ----KPVKLRGEYHYLLKNYTAKNGGSIRDIVDKAVEEYIDKY----- : UniRef90_I3GYR4
UniRef90_E8ZCY8 : ------------MHHIIKIETAKNGGNVKEVMEIRLRSKLKSVL---- : UniRef90_E8ZCY8

                : 1---------11--------21--------31--------41------ :
OrigSeq         : IMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDQALEEYIRKYLPDKL : OrigSeq

Jnet            : -----EEEE----EEEEEHH-------HHHHHHHHHHHHHHHH----- : Jnet
jhmm            : -----EEEE----EEEEHHHH------HHHHHHHHHHHHHHHHH---- : jhmm
jpssm           : -----EEEEEEEEEEEEEEE-------HHHHHHHHHHHHHHHH----- : jpssm

Lupas 14        : ------------------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------------------ : Lupas 28

Jnet_25         : ------B-B-B-BBBBB-B-BB-----B--BB--BB--BB--BB---- : Jnet_25
Jnet_5          : --------B------BB----------B--BB---B---B-------- : Jnet_5
Jnet_0          : ------------------------------------------------ : Jnet_0
Jnet Rel        : 999861566133154442011688763689999999999987218999 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.