SILENT_MODE
BLOCK_FILE jp_SsKoFtz.concise.blc
MAX_NSEQ 1079
MAX_INPUT_LEN 1081
OUTPUT_FILE jp_SsKoFtz.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 72 1068   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1069 72 1078 H SPACE
SUB_CHARS 1 1069 72 1078 E SPACE
SUB_CHARS 1 1069 72 1078 - SPACE
STRAND 48 1072 52
COLOUR_TEXT_REGION 48 1072 52 1072 51
STRAND 59 1072 62
COLOUR_TEXT_REGION 59 1072 62 1072 51
STRAND 68 1072 70
COLOUR_TEXT_REGION 68 1072 70 1072 51
HELIX 35 1072 42
COLOUR_TEXT_REGION 35 1072 42 1072 50
STRAND 5 1077 6
COLOUR_TEXT_REGION 5 1077 6 1077 51
STRAND 32 1077 33
COLOUR_TEXT_REGION 32 1077 33 1077 51
STRAND 48 1077 52
COLOUR_TEXT_REGION 48 1077 52 1077 51
STRAND 59 1077 62
COLOUR_TEXT_REGION 59 1077 62 1077 51
STRAND 68 1077 71
COLOUR_TEXT_REGION 68 1077 71 1077 51
HELIX 35 1077 42
COLOUR_TEXT_REGION 35 1077 42 1077 50
STRAND 49 1078 52
COLOUR_TEXT_REGION 49 1078 52 1078 51
STRAND 59 1078 62
COLOUR_TEXT_REGION 59 1078 62 1078 51
STRAND 68 1078 70
COLOUR_TEXT_REGION 68 1078 70 1078 51
HELIX 35 1078 42
COLOUR_TEXT_REGION 35 1078 42 1078 50