SILENT_MODE BLOCK_FILE jp_UHhhcAN.concise.blc MAX_NSEQ 339 MAX_INPUT_LEN 341 OUTPUT_FILE jp_UHhhcAN.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 170 328 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 329 170 338 H SPACE SUB_CHARS 1 329 170 338 E SPACE SUB_CHARS 1 329 170 338 - SPACE HELIX 4 332 13 COLOUR_TEXT_REGION 4 332 13 332 50 HELIX 20 332 31 COLOUR_TEXT_REGION 20 332 31 332 50 HELIX 39 332 47 COLOUR_TEXT_REGION 39 332 47 332 50 HELIX 56 332 74 COLOUR_TEXT_REGION 56 332 74 332 50 HELIX 91 332 111 COLOUR_TEXT_REGION 91 332 111 332 50 HELIX 121 332 135 COLOUR_TEXT_REGION 121 332 135 332 50 HELIX 145 332 167 COLOUR_TEXT_REGION 145 332 167 332 50 HELIX 4 337 13 COLOUR_TEXT_REGION 4 337 13 337 50 HELIX 20 337 30 COLOUR_TEXT_REGION 20 337 30 337 50 HELIX 39 337 47 COLOUR_TEXT_REGION 39 337 47 337 50 HELIX 56 337 74 COLOUR_TEXT_REGION 56 337 74 337 50 HELIX 91 337 111 COLOUR_TEXT_REGION 91 337 111 337 50 HELIX 121 337 134 COLOUR_TEXT_REGION 121 337 134 337 50 HELIX 145 337 168 COLOUR_TEXT_REGION 145 337 168 337 50 HELIX 4 338 14 COLOUR_TEXT_REGION 4 338 14 338 50 HELIX 20 338 32 COLOUR_TEXT_REGION 20 338 32 338 50 HELIX 40 338 48 COLOUR_TEXT_REGION 40 338 48 338 50 HELIX 56 338 74 COLOUR_TEXT_REGION 56 338 74 338 50 HELIX 90 338 112 COLOUR_TEXT_REGION 90 338 112 338 50 HELIX 121 338 135 COLOUR_TEXT_REGION 121 338 135 338 50 HELIX 145 338 167 COLOUR_TEXT_REGION 145 338 167 338 50