SILENT_MODE BLOCK_FILE jp_y1ifIRg.concise.blc MAX_NSEQ 1124 MAX_INPUT_LEN 1126 OUTPUT_FILE jp_y1ifIRg.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 163 1113 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1114 163 1123 H SPACE SUB_CHARS 1 1114 163 1123 E SPACE SUB_CHARS 1 1114 163 1123 - SPACE HELIX 3 1117 15 COLOUR_TEXT_REGION 3 1117 15 1117 50 HELIX 19 1117 32 COLOUR_TEXT_REGION 19 1117 32 1117 50 HELIX 40 1117 50 COLOUR_TEXT_REGION 40 1117 50 1117 50 HELIX 55 1117 66 COLOUR_TEXT_REGION 55 1117 66 1117 50 HELIX 76 1117 80 COLOUR_TEXT_REGION 76 1117 80 1117 50 HELIX 85 1117 97 COLOUR_TEXT_REGION 85 1117 97 1117 50 HELIX 104 1117 118 COLOUR_TEXT_REGION 104 1117 118 1117 50 HELIX 124 1117 134 COLOUR_TEXT_REGION 124 1117 134 1117 50 HELIX 142 1117 149 COLOUR_TEXT_REGION 142 1117 149 1117 50 HELIX 151 1117 161 COLOUR_TEXT_REGION 151 1117 161 1117 50 HELIX 3 1122 15 COLOUR_TEXT_REGION 3 1122 15 1122 50 HELIX 19 1122 32 COLOUR_TEXT_REGION 19 1122 32 1122 50 HELIX 40 1122 51 COLOUR_TEXT_REGION 40 1122 51 1122 50 HELIX 56 1122 66 COLOUR_TEXT_REGION 56 1122 66 1122 50 HELIX 76 1122 80 COLOUR_TEXT_REGION 76 1122 80 1122 50 HELIX 85 1122 97 COLOUR_TEXT_REGION 85 1122 97 1122 50 HELIX 104 1122 118 COLOUR_TEXT_REGION 104 1122 118 1122 50 HELIX 123 1122 133 COLOUR_TEXT_REGION 123 1122 133 1122 50 HELIX 142 1122 161 COLOUR_TEXT_REGION 142 1122 161 1122 50 HELIX 3 1123 15 COLOUR_TEXT_REGION 3 1123 15 1123 50 HELIX 19 1123 33 COLOUR_TEXT_REGION 19 1123 33 1123 50 HELIX 40 1123 49 COLOUR_TEXT_REGION 40 1123 49 1123 50 HELIX 54 1123 66 COLOUR_TEXT_REGION 54 1123 66 1123 50 HELIX 75 1123 81 COLOUR_TEXT_REGION 75 1123 81 1123 50 HELIX 85 1123 97 COLOUR_TEXT_REGION 85 1123 97 1123 50 HELIX 106 1123 119 COLOUR_TEXT_REGION 106 1123 119 1123 50 HELIX 126 1123 134 COLOUR_TEXT_REGION 126 1123 134 1123 50 HELIX 142 1123 149 COLOUR_TEXT_REGION 142 1123 149 1123 50 HELIX 151 1123 161 COLOUR_TEXT_REGION 151 1123 161 1123 50