SILENT_MODE
BLOCK_FILE jp_UpSsGy7.concise.blc
MAX_NSEQ 483
MAX_INPUT_LEN 485
OUTPUT_FILE jp_UpSsGy7.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 98 472   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 473 98 482 H SPACE
SUB_CHARS 1 473 98 482 E SPACE
SUB_CHARS 1 473 98 482 - SPACE
STRAND 3 476 14
COLOUR_TEXT_REGION 3 476 14 476 51
STRAND 40 476 43
COLOUR_TEXT_REGION 40 476 43 476 51
STRAND 52 476 60
COLOUR_TEXT_REGION 52 476 60 476 51
STRAND 85 476 96
COLOUR_TEXT_REGION 85 476 96 476 51
HELIX 19 476 35
COLOUR_TEXT_REGION 19 476 35 476 50
HELIX 64 476 80
COLOUR_TEXT_REGION 64 476 80 476 50
STRAND 4 481 14
COLOUR_TEXT_REGION 4 481 14 481 51
STRAND 40 481 43
COLOUR_TEXT_REGION 40 481 43 481 51
STRAND 52 481 60
COLOUR_TEXT_REGION 52 481 60 481 51
STRAND 84 481 96
COLOUR_TEXT_REGION 84 481 96 481 51
HELIX 20 481 35
COLOUR_TEXT_REGION 20 481 35 481 50
HELIX 64 481 80
COLOUR_TEXT_REGION 64 481 80 481 50
STRAND 3 482 14
COLOUR_TEXT_REGION 3 482 14 482 51
STRAND 39 482 43
COLOUR_TEXT_REGION 39 482 43 482 51
STRAND 53 482 60
COLOUR_TEXT_REGION 53 482 60 482 51
STRAND 85 482 96
COLOUR_TEXT_REGION 85 482 96 482 51
HELIX 19 482 35
COLOUR_TEXT_REGION 19 482 35 482 50
HELIX 64 482 80
COLOUR_TEXT_REGION 64 482 80 482 50