SILENT_MODE BLOCK_FILE jp_XUTVLvu.concise.blc MAX_NSEQ 532 MAX_INPUT_LEN 534 OUTPUT_FILE jp_XUTVLvu.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 134 521 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 522 134 531 H SPACE SUB_CHARS 1 522 134 531 E SPACE SUB_CHARS 1 522 134 531 - SPACE STRAND 25 525 30 COLOUR_TEXT_REGION 25 525 30 525 51 STRAND 36 525 40 COLOUR_TEXT_REGION 36 525 40 525 51 STRAND 78 525 83 COLOUR_TEXT_REGION 78 525 83 525 51 STRAND 88 525 93 COLOUR_TEXT_REGION 88 525 93 525 51 STRAND 98 525 104 COLOUR_TEXT_REGION 98 525 104 525 51 STRAND 110 525 110 COLOUR_TEXT_REGION 110 525 110 525 51 HELIX 5 525 20 COLOUR_TEXT_REGION 5 525 20 525 50 HELIX 51 525 72 COLOUR_TEXT_REGION 51 525 72 525 50 HELIX 111 525 131 COLOUR_TEXT_REGION 111 525 131 525 50 STRAND 25 530 30 COLOUR_TEXT_REGION 25 530 30 530 51 STRAND 36 530 39 COLOUR_TEXT_REGION 36 530 39 530 51 STRAND 78 530 83 COLOUR_TEXT_REGION 78 530 83 530 51 STRAND 88 530 93 COLOUR_TEXT_REGION 88 530 93 530 51 STRAND 98 530 104 COLOUR_TEXT_REGION 98 530 104 530 51 HELIX 5 530 20 COLOUR_TEXT_REGION 5 530 20 530 50 HELIX 51 530 72 COLOUR_TEXT_REGION 51 530 72 530 50 HELIX 110 530 132 COLOUR_TEXT_REGION 110 530 132 530 50 STRAND 25 531 30 COLOUR_TEXT_REGION 25 531 30 531 51 STRAND 36 531 40 COLOUR_TEXT_REGION 36 531 40 531 51 STRAND 79 531 84 COLOUR_TEXT_REGION 79 531 84 531 51 STRAND 88 531 93 COLOUR_TEXT_REGION 88 531 93 531 51 STRAND 98 531 104 COLOUR_TEXT_REGION 98 531 104 531 51 STRAND 110 531 113 COLOUR_TEXT_REGION 110 531 113 531 51 HELIX 5 531 21 COLOUR_TEXT_REGION 5 531 21 531 50 HELIX 52 531 72 COLOUR_TEXT_REGION 52 531 72 531 50 HELIX 114 531 131 COLOUR_TEXT_REGION 114 531 131 531 50