SILENT_MODE
BLOCK_FILE jp_xJoF4Dm.concise.blc
MAX_NSEQ 488
MAX_INPUT_LEN 490
OUTPUT_FILE jp_xJoF4Dm.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 107 477   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 478 107 487 H SPACE
SUB_CHARS 1 478 107 487 E SPACE
SUB_CHARS 1 478 107 487 - SPACE
STRAND 4 481 11
COLOUR_TEXT_REGION 4 481 11 481 51
STRAND 30 481 37
COLOUR_TEXT_REGION 30 481 37 481 51
STRAND 43 481 48
COLOUR_TEXT_REGION 43 481 48 481 51
STRAND 79 481 85
COLOUR_TEXT_REGION 79 481 85 481 51
HELIX 14 481 26
COLOUR_TEXT_REGION 14 481 26 481 50
HELIX 53 481 65
COLOUR_TEXT_REGION 53 481 65 481 50
HELIX 71 481 73
COLOUR_TEXT_REGION 71 481 73 481 50
HELIX 88 481 101
COLOUR_TEXT_REGION 88 481 101 481 50
STRAND 4 486 11
COLOUR_TEXT_REGION 4 486 11 486 51
STRAND 30 486 37
COLOUR_TEXT_REGION 30 486 37 486 51
STRAND 43 486 47
COLOUR_TEXT_REGION 43 486 47 486 51
STRAND 79 486 85
COLOUR_TEXT_REGION 79 486 85 486 51
HELIX 14 486 26
COLOUR_TEXT_REGION 14 486 26 486 50
HELIX 53 486 65
COLOUR_TEXT_REGION 53 486 65 486 50
HELIX 71 486 73
COLOUR_TEXT_REGION 71 486 73 486 50
HELIX 88 486 101
COLOUR_TEXT_REGION 88 486 101 486 50
STRAND 4 487 11
COLOUR_TEXT_REGION 4 487 11 487 51
STRAND 30 487 37
COLOUR_TEXT_REGION 30 487 37 487 51
STRAND 44 487 49
COLOUR_TEXT_REGION 44 487 49 487 51
STRAND 78 487 84
COLOUR_TEXT_REGION 78 487 84 487 51
HELIX 15 487 26
COLOUR_TEXT_REGION 15 487 26 487 50
HELIX 53 487 65
COLOUR_TEXT_REGION 53 487 65 487 50
HELIX 69 487 73
COLOUR_TEXT_REGION 69 487 73 487 50
HELIX 88 487 101
COLOUR_TEXT_REGION 88 487 101 487 50