SILENT_MODE BLOCK_FILE jp_VYqPMyc.concise.blc MAX_NSEQ 418 MAX_INPUT_LEN 420 OUTPUT_FILE jp_VYqPMyc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 154 407 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 408 154 417 H SPACE SUB_CHARS 1 408 154 417 E SPACE SUB_CHARS 1 408 154 417 - SPACE STRAND 16 411 23 COLOUR_TEXT_REGION 16 411 23 411 51 STRAND 29 411 38 COLOUR_TEXT_REGION 29 411 38 411 51 STRAND 73 411 77 COLOUR_TEXT_REGION 73 411 77 411 51 STRAND 85 411 90 COLOUR_TEXT_REGION 85 411 90 411 51 HELIX 49 411 63 COLOUR_TEXT_REGION 49 411 63 411 50 HELIX 95 411 111 COLOUR_TEXT_REGION 95 411 111 411 50 HELIX 120 411 122 COLOUR_TEXT_REGION 120 411 122 411 50 HELIX 131 411 151 COLOUR_TEXT_REGION 131 411 151 411 50 STRAND 4 416 5 COLOUR_TEXT_REGION 4 416 5 416 51 STRAND 16 416 22 COLOUR_TEXT_REGION 16 416 22 416 51 STRAND 29 416 38 COLOUR_TEXT_REGION 29 416 38 416 51 STRAND 73 416 77 COLOUR_TEXT_REGION 73 416 77 416 51 STRAND 85 416 91 COLOUR_TEXT_REGION 85 416 91 416 51 HELIX 49 416 63 COLOUR_TEXT_REGION 49 416 63 416 50 HELIX 95 416 111 COLOUR_TEXT_REGION 95 416 111 416 50 HELIX 120 416 122 COLOUR_TEXT_REGION 120 416 122 416 50 HELIX 131 416 152 COLOUR_TEXT_REGION 131 416 152 416 50 STRAND 16 417 23 COLOUR_TEXT_REGION 16 417 23 417 51 STRAND 29 417 38 COLOUR_TEXT_REGION 29 417 38 417 51 STRAND 72 417 77 COLOUR_TEXT_REGION 72 417 77 417 51 STRAND 85 417 90 COLOUR_TEXT_REGION 85 417 90 417 51 HELIX 50 417 62 COLOUR_TEXT_REGION 50 417 62 417 50 HELIX 95 417 111 COLOUR_TEXT_REGION 95 417 111 417 50 HELIX 120 417 123 COLOUR_TEXT_REGION 120 417 123 417 50 HELIX 131 417 149 COLOUR_TEXT_REGION 131 417 149 417 50